View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8781_high_35 (Length: 252)
Name: NF8781_high_35
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_high_35 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 213; Significance: 1e-117; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 238
Target Start/End: Original strand, 4987343 - 4987582
Alignment:
| Q |
1 |
atgtttcgattcaattatattttcatttgaaaattattgttccctaattcacaaggagttcattcaaaagtccatatctttggattggattcatttttat |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
4987343 |
atgtttcgattcaattatattttcatttgaaaattattgttccctaattaacaaggaattcattcaaaagtccatatctttggattgaattcatttttat |
4987442 |
T |
|
| Q |
101 |
actccaaaatttaaatct--gccggtgaacacacgcaaaatcatagtccttatcaaggtacctactcgtattatccaattttttaaaaaattctgctatc |
198 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
4987443 |
actccaaaatttaaatctctgccggtgaacacacgcaaaatcatagtccttatcaaggtacctactcgtattatccaatttttaaaaaaattctgctatc |
4987542 |
T |
|
| Q |
199 |
gacattagtggccaaacagtcaccaagtagtgtagtattt |
238 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4987543 |
gacattagtggccaaacagtcaccaagtagtgtagtattt |
4987582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University