View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_high_6 (Length: 471)
Name: NF8781_high_6
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 433; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 433; E-Value: 0
Query Start/End: Original strand, 18 - 454
Target Start/End: Complemental strand, 32484536 - 32484100
Alignment:
| Q |
18 |
aaagcattgataattttgcacaaaaatcaaacatccttgatataataatctcattttgttctactacttcaatatgtgtgtcaaatttacctctactact |
117 |
Q |
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| T |
32484536 |
aaagcattgataattttgcacaaaaatcaaacatccttgatataataatctcattttgttctactacttcaatatgtgtgtcaaatttacctctactact |
32484437 |
T |
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| Q |
118 |
tggccacaacaacaatgtcatggtcaaatgattgaaacacaaattttggtaaaagagaagtatatatgtgggataatatatacgccatgatccccataat |
217 |
Q |
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| T |
32484436 |
tggccacaacaacaatgtcatggtcaaatgattgaaacacaaattttggtaaaagagaagtatatatgtgggataatatatacgccatgatccccataat |
32484337 |
T |
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| Q |
218 |
aactcctctttcctctcaattttgttttcaagatcttgggcgagggaagaattgcgtaccactagccgtcatgaaggcattaatcggagccgaatacaac |
317 |
Q |
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| T |
32484336 |
aactcctctttcttctcaattttgttttcaagatcttgggcgagggaagaattgcgtaccactagccgtcatgaaggcattaatcggagccgaatacaac |
32484237 |
T |
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| Q |
318 |
gaagaaggatcaacaagtgcgcccgaagaggcaacaacagtggtatcagagtcggcaattaggttcaacggttgagcaacgccaacaccgcctccaccgg |
417 |
Q |
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| T |
32484236 |
gaagaaggatcaacaagtgcgcccgaagaggcaacaacagtggtatcagagtcggcaattaggttcaacggttgagcaacgccaacaccgcctccaccgg |
32484137 |
T |
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| Q |
418 |
aagtctccccaatcatgtaattactattattataatt |
454 |
Q |
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| T |
32484136 |
aagtctccccaatcatgtaattactattattataatt |
32484100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 244 - 333
Target Start/End: Complemental strand, 8103092 - 8103003
Alignment:
| Q |
244 |
ttcaagatcttgggcgagggaagaattgcgtaccactagccgtcatgaaggcattaatcggagccgaatacaacgaagaaggatcaacaa |
333 |
Q |
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| T |
8103092 |
ttcaagatcttgggtgggggaagaattgcgtaccactagaaggcatgaaggtattaagtggagctggatacaaagaagaaggatcaacaa |
8103003 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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