View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_high_7 (Length: 469)
Name: NF8781_high_7
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 15 - 451
Target Start/End: Original strand, 42563602 - 42564025
Alignment:
| Q |
15 |
gacatcatttcagcgataacaaacgccatatccttacaactataaaaatccgtaattgcccgtcttttgtattcaagtgacttcaaaagagggcaacatt |
114 |
Q |
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| T |
42563602 |
gacatcatttcagcgataacaaacgccatatccttacaactataaaaatccgtaattgccc-------------aagtgacttcaaaagagggcaacatt |
42563688 |
T |
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| Q |
115 |
gttcaatggcttcaagagaggacttagttaggttgcaatgtgaaatgtcaagcttgtctaatttccgaagctttctcgcagcttcactagaaaatccttc |
214 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42563689 |
gtccaatggcttcaagagaggacttagttaggttgcaatgtgaaatgtcaagcttgtctaatttccgaagctttctcgcagcttcactagaaaatccttc |
42563788 |
T |
|
| Q |
215 |
atccgtaattgatttgcaatttacaaaccgcatgcaacgtaggtgactaccgcatgcaatgtattaaatgaacatgnnnnnnnnntcttctcttatattt |
314 |
Q |
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|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||||||| |
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| T |
42563789 |
atccgtaattgattcgcaatttacaaaccgcatgcaacgtaggtgactaccgcatgcaatgtattaaatgaacctgaaaaaagaatcttctcttatattt |
42563888 |
T |
|
| Q |
315 |
aggatcttatcattccgtctaattctatgcacaagcgtgcttaagcaattaacttagtaattcccttttggagtaattatttcttatacactcatagttt |
414 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42563889 |
aggatcttatcattccgtctaattctatgcacaagcgtgcttaagcaattaacttagtaattcccttttggagtaattatttcttatacactcatagttt |
42563988 |
T |
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| Q |
415 |
caatgcctagtgatgcatccatctttaagggagtgca |
451 |
Q |
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| T |
42563989 |
caatgcctagtgatgcatccatctttaagagagtgca |
42564025 |
T |
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