View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_16 (Length: 411)
Name: NF8781_low_16
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_16 |
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| [»] scaffold1377 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 271; Significance: 1e-151; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 271; E-Value: 1e-151
Query Start/End: Original strand, 111 - 405
Target Start/End: Original strand, 49170240 - 49170534
Alignment:
| Q |
111 |
atcaaaaaatgaagcataaaacgataaaatgcaaagttcttccaccataatggctgttcgctgtcaaattagatcatattaagaaccttctttcccgttc |
210 |
Q |
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| T |
49170240 |
atcaaaaaatgaagcataaaacgataaaatgcaaagttcttccaccataatggctgttcgctgtcaaattagatcatattaagaaccttctttcccgttc |
49170339 |
T |
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| Q |
211 |
atttgtatgtggagacaatcctatgtccttcaaccaattgaaagtttacattcggaataaatccttggacacgagtataattctcgtaaaggttgcagac |
310 |
Q |
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| T |
49170340 |
atttgtatgtagagacaatcctatgtccttcaaccaattgaaagtttacattcggaagaaatccttggacacgagtataattcttgtaaaggttgcagac |
49170439 |
T |
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| Q |
311 |
ttggcttttgtttaaataaaaaagtactggtgatctgcatgacccctaaaagccgcgcattctgcaaaatatattttgcaaattgatgtccatct |
405 |
Q |
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| T |
49170440 |
ttggcttttgtttaaataaaaaagtaccggtgatctgcatgacccctaaaagccgcgcattctgcaaaatatattttgcaaattgaagttcatct |
49170534 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 19 - 112
Target Start/End: Original strand, 49170109 - 49170202
Alignment:
| Q |
19 |
gtaaactcatgtgagagaagatatatggtagctaatagatagttaacagcaactaaatttaccagtagctaaaaatagaccatttgtttaatat |
112 |
Q |
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| T |
49170109 |
gtaaactcatgtgagagaagatatatggtagctaatagatagttaacagcaactaaatttaccagtagctaaaaatagaccattagtttaatat |
49170202 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 134 - 290
Target Start/End: Complemental strand, 49179866 - 49179710
Alignment:
| Q |
134 |
ataaaatgcaaagttcttccaccataatggctgttcgctgtcaaattagatcatattaagaaccttctttcccgttcatttgtatgtggagacaatccta |
233 |
Q |
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| T |
49179866 |
ataaattgcaaagttcttccaccataatggcagttaaccgtcaaattagatcatattaaaaggcttctttccatttcatttgtatgcagagacaatccta |
49179767 |
T |
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| Q |
234 |
tgtccttcaaccaattgaaagtttacattcggaataaatccttggacacgagtataa |
290 |
Q |
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| T |
49179766 |
tgtccttcaactaactgaaagcttacatttgcgagaaatccttggaaacgaggataa |
49179710 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 348 - 393
Target Start/End: Complemental strand, 49179649 - 49179604
Alignment:
| Q |
348 |
catgacccctaaaagccgcgcattctgcaaaatatattttgcaaat |
393 |
Q |
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| T |
49179649 |
catgacccctaaaagccgcgcattcagtagaatatattttgtaaat |
49179604 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 49180012 - 49179979
Alignment:
| Q |
31 |
gagagaagatatatggtagctaatagatagttaa |
64 |
Q |
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| T |
49180012 |
gagagaagatatatggtagctaataaatagttaa |
49179979 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 396
Target Start/End: Original strand, 3254899 - 3254938
Alignment:
| Q |
357 |
taaaagccgcgcattctgcaaaatatattttgcaaattga |
396 |
Q |
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| T |
3254899 |
taaaagactcgcattctgcaaaatatattttgcaaattga |
3254938 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 357 - 396
Target Start/End: Original strand, 14435608 - 14435647
Alignment:
| Q |
357 |
taaaagccgcgcattctgcaaaatatattttgcaaattga |
396 |
Q |
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| T |
14435608 |
taaaagcctcgcattctgcaatatatattttgcaaattga |
14435647 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1377 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: scaffold1377
Description:
Target: scaffold1377; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 357 - 393
Target Start/End: Original strand, 1358 - 1394
Alignment:
| Q |
357 |
taaaagccgcgcattctgcaaaatatattttgcaaat |
393 |
Q |
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| T |
1358 |
taaaagcctcgcattctgcaaaatatatgttgcaaat |
1394 |
T |
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