View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_17 (Length: 411)
Name: NF8781_low_17
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_17 |
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Alignment Details
Target: chr3 (Bit Score: 387; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 387; E-Value: 0
Query Start/End: Original strand, 1 - 395
Target Start/End: Complemental strand, 50223686 - 50223292
Alignment:
| Q |
1 |
ctaaaagtgcatttgccagaagccttctttctgcttccatcattgcaaaactcccccaactcacctttatgaaaatttagactggttaatattatattaa |
100 |
Q |
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| T |
50223686 |
ctaaaagtgcatttgccagaagccttctttctgcttccatcattgcaaaactcccccaactcacctttatgaaaatttagaccggttaatattatattaa |
50223587 |
T |
|
| Q |
101 |
caattatggcgtacctaaaaatatcatatgcgccatacataccggttcactgtgaatttctcgaccaacaaagtatctgctgaaatgtactggtttttcc |
200 |
Q |
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| T |
50223586 |
caattatggcgtacctaaaaatatcatatgcgccatacataccggttcactgtgaatttctcgaccaacaaagtatctgctgaaatgtactggtttttcc |
50223487 |
T |
|
| Q |
201 |
ctggatgcatgtacataaattgaaaatctgccatcatgcccctgcactttgttataagtaataaagatcaaataggaaggaactaaattttcgtggcata |
300 |
Q |
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| T |
50223486 |
ctggatgcatgtacataaattgaaaatctgccatcatgcccctgcactttgttataagtaataaagatcaaataggaaggaactaaattttcgtggcata |
50223387 |
T |
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| Q |
301 |
aatttggctcttgaataaatccatcttcacaagtaatggttagtggttacacaacttttgcatacattctttgtacaattttcacacactgttac |
395 |
Q |
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| T |
50223386 |
aatttggctcttgaataagtccatcttcacaagtaatggttagtggttacacaacttttgcatacattctttgtacaattttcacacactgttac |
50223292 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 138 - 246
Target Start/End: Original strand, 1652218 - 1652326
Alignment:
| Q |
138 |
cataccggttcactgtgaatttctcgaccaacaaagtatctgctgaaatgtactggtttttccctggatgcatgtacataaattgaaaatctgccatcat |
237 |
Q |
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||||||||||||||||| || ||||| ||||| || || ||||| ||||| ||||||||| | |||||||| ||||||| |||||| | || |||| |
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| T |
1652218 |
cataccggttcactgtggatgtctcgtccaacgaaataggggctgacatgtatcggtttttcctttgatgcatgcacataaacagaaaattttccttcat |
1652317 |
T |
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| Q |
238 |
gcccctgca |
246 |
Q |
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| T |
1652318 |
ggccctgca |
1652326 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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