View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_18 (Length: 410)
Name: NF8781_low_18
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_18 |
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Alignment Details
Target: chr3 (Bit Score: 226; Significance: 1e-124; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 1 - 343
Target Start/End: Original strand, 48691478 - 48691818
Alignment:
| Q |
1 |
taactattttgtgcaagaaaaaccggggtggtgttttccactaaaatatgacattattttctttaacttttacctatatatatattttctgtcnnnnnnn |
100 |
Q |
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| T |
48691478 |
taactattttgtgcaagaaaaaccggagtggtgttttccactaaaatatgacattattttctttaacttttacctatatat----tttctgtcaaaaaaa |
48691573 |
T |
|
| Q |
101 |
ntaaacaata-----tatttttcaatattaagccgatagtatagatttgagcagagctccctccctcagtcacctaggtggtaggtaatacctggactcg |
195 |
Q |
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| T |
48691574 |
ataaacaatacagtatatttttcaatattaagctgatagtatagatttgagcagagctccctccctcagttacctaggtggtaggtaatacctggactcg |
48691673 |
T |
|
| Q |
196 |
gtaggtatatagataaccatcaaccaaccatgcatgttctatctctaaatctatgtttttaggaagaa-nnnnnnnatcattaaatataaatcctatttt |
294 |
Q |
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| T |
48691674 |
gtaggtatatagacaaccatcaaccaaccatgcatgttctatctctaaatctatgtttttaggaagaattttttttatcattaaatataaatcctatttt |
48691773 |
T |
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| Q |
295 |
aaattagttagtcaataccacaactgaactcttacggattcaatccatt |
343 |
Q |
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||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
48691774 |
aaa----ttagtcaataccacaactgaactcttacggattcaatccatt |
48691818 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 348 - 393
Target Start/End: Original strand, 48691853 - 48691898
Alignment:
| Q |
348 |
ttctatctgagcttaaaatttccattgaactcctatatgtttcatg |
393 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48691853 |
ttctatccgagcttaaaatttccattgaactcctatatgtttcatg |
48691898 |
T |
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