View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_19 (Length: 407)
Name: NF8781_low_19
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_19 |
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Alignment Details
Target: chr3 (Bit Score: 205; Significance: 1e-112; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 19 - 235
Target Start/End: Complemental strand, 25975970 - 25975754
Alignment:
| Q |
19 |
ataacctctaaaagtcacaaatatttttggatgcaaaagatcgacattgttttctcaacatggatgacttctatggataaagacatgcatggagttttag |
118 |
Q |
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| T |
25975970 |
ataacctctaaaagtcacaaatatttttggatgcaaaagatcgacattgttttctcaacatggatgacttctatggataaagacatgcatagagttttag |
25975871 |
T |
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| Q |
119 |
ttttagtttctttttgccttggttatgatcacaaaataccaaagatgtattaatcatttaatacggcttcaagattaatcgaaagtcatttattataaac |
218 |
Q |
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| T |
25975870 |
ttttagtttctttttgccttagttatgatcacaaaataccaaagatgtattaatcatttaatacggcttcaagattaatcgaaagtcatttattataaac |
25975771 |
T |
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| Q |
219 |
taattaacaatgtgtag |
235 |
Q |
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| T |
25975770 |
taattaacaatatgtag |
25975754 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 248 - 371
Target Start/End: Complemental strand, 25975718 - 25975593
Alignment:
| Q |
248 |
atatcaaaaacaatgcgtataatataatgtaaatagnnnnnnnn--ttgaagtaataatgtacatagaaattatcccctagggatgtctaaaagccaaat |
345 |
Q |
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||||||||||||| ||||||||||||||||| |||| ||||| ||||| ||| |||||||||||||||||||||||||||||||||||||| |
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| T |
25975718 |
atatcaaaaacaacgcgtataatataatgtacatagaaaaaaaaaattgaaataatactgttcatagaaattatcccctagggatgtctaaaagccaaat |
25975619 |
T |
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| Q |
346 |
tttattcaaattcaatagctttttaa |
371 |
Q |
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||||||||| |||||||||||||||| |
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| T |
25975618 |
tttattcaatttcaatagctttttaa |
25975593 |
T |
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