View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_2 (Length: 583)
Name: NF8781_low_2
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 444; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 444; E-Value: 0
Query Start/End: Original strand, 19 - 568
Target Start/End: Original strand, 1136041 - 1136587
Alignment:
| Q |
19 |
agtgcatatgtcaagctcaaagagtttttgcggggatcacccattaaaaatgtcctcacttcaacaacgataatttaacctatgatcttttacgtgagtc |
118 |
Q |
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| T |
1136041 |
agtgcatatgtcaagctcaaagagtttttacggggatcacccattaaaaatgtcctcacttcaacaacgataatttaacctatgatcttttacgtgagtc |
1136140 |
T |
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| Q |
119 |
aacttcttttaattagtcaacattcatcgacaattatttattaaatttgataaaaaaccatactgagtttagcattagataataatttattaaaattact |
218 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||| |
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| T |
1136141 |
aacttcttgtaattagtcaacattcatcgacaattatttattaaatttgataaaaa-ctatactgagtttagcattagataataatttattaaaattact |
1136239 |
T |
|
| Q |
219 |
tttgaatggttggaaatatttcatagaggcaagtttttgtttagtttgttatttaatgatgtttttgtagatattttaacaaaagagttaaaatatattt |
318 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1136240 |
tttgaatggttggaaatatttcatagaggcaagtttttgtttagtttgttatttaatgatgtttttgtagatattttaacaaaagagttaaaatatattt |
1136339 |
T |
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| Q |
319 |
tcttcattttacattgaatgacactttaaaagaagnnnnnnntgcttcaatataaatgtcattttcagttttcaatgtatcagttaac-tttttnnnnnn |
417 |
Q |
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||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
1136340 |
tcttcattttacattgaatgacactttaaaagaagaaaaaaatgcttcaatataaatgtcattttcagttttcaatgtatcaattaacttttttttttaa |
1136439 |
T |
|
| Q |
418 |
nnnttaagtcctatagtttaatcaaataaaagtagattttatacttaattgagtcaagccccactatgtgaacacctccagttgagagatttattgtctt |
517 |
Q |
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| T |
1136440 |
aatttaagtcc--tagtttagtcaaataaaagtagattttatacttaattgagtcaag-cccactatgtgaacacctccagttgagagatttattgtctt |
1136536 |
T |
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| Q |
518 |
cttggtgtactcttaggtttatactcttacttctctttactgtaatgatgt |
568 |
Q |
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|||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
1136537 |
cttggtgtactcttaggtttatactcttacctctctttactgtaatgatgt |
1136587 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 131 - 171
Target Start/End: Complemental strand, 17609559 - 17609519
Alignment:
| Q |
131 |
ttagtcaacattcatcgacaattatttattaaatttgataa |
171 |
Q |
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|||| |||| ||||||||||||||| ||||||||||||||| |
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| T |
17609559 |
ttagacaaccttcatcgacaattatctattaaatttgataa |
17609519 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 23688697 - 23688737
Alignment:
| Q |
133 |
agtcaacattcatcgacaattatttattaaatttgataaaa |
173 |
Q |
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|||||||| |||||||||||||| |||||||||||| |||| |
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| T |
23688697 |
agtcaacactcatcgacaattatctattaaatttgaaaaaa |
23688737 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 133 - 173
Target Start/End: Original strand, 24060934 - 24060974
Alignment:
| Q |
133 |
agtcaacattcatcgacaattatttattaaatttgataaaa |
173 |
Q |
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|||||||| |||||||||||||| |||||||||||| |||| |
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| T |
24060934 |
agtcaacactcatcgacaattatctattaaatttgaaaaaa |
24060974 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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