View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8781_low_21 (Length: 395)
Name: NF8781_low_21
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_21 |
 | |
|
| [»] scaffold0051 (1 HSPs) |
| | |
|
| [»] scaffold0108 (1 HSPs) |
| | |
|
| [»] scaffold0064 (1 HSPs) |
| | |
|
| [»] scaffold0319 (1 HSPs) |
| | |
|
| [»] scaffold0897 (1 HSPs) |
| | |
|
| [»] scaffold0040 (1 HSPs) |
| | |
|
| [»] scaffold0304 (2 HSPs) |
| | |
|
| [»] scaffold0022 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 346; Significance: 0; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 346; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Complemental strand, 10787402 - 10787017
Alignment:
| Q |
1 |
ctgaggtgtacccaattcatgctggaccctaagccctgcattcctaccatccaaagcttgttgcagaatgctatggatgccggctctgtgaccgccctgt |
100 |
Q |
| |
|
|||||||||||||| |||||||| |||||| ||||||||||||||||| ||||| |||||||||||||||||||||| || ||||||||||||||||||| |
|
|
| T |
10787402 |
ctgaggtgtacccagttcatgctagaccctgagccctgcattcctaccgtccaaggcttgttgcagaatgctatggacgctggctctgtgaccgccctgt |
10787303 |
T |
|
| Q |
101 |
acttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaaaaaacgttgcgcg |
200 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10787302 |
acttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaaaaaacgttgcgcg |
10787203 |
T |
|
| Q |
201 |
ctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggttcgccgtcgattttgt |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
10787202 |
ctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattactgcctcctcagttggttcgccgtcgattttgt |
10787103 |
T |
|
| Q |
301 |
aataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatgtcca |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
10787102 |
aataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatctcca |
10787017 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 2 - 386
Target Start/End: Original strand, 14688392 - 14688776
Alignment:
| Q |
2 |
tgaggtgtacccaattcatgctggaccctaagccctgcattcctaccatccaaagcttgttgcagaatgctatggatgccggctctgtgaccgccctgta |
101 |
Q |
| |
|
||||||| ||||| ||||||||||||||| |||||||||| |||||||||||| | |||||| ||||||| |||||||| |||||||||||||||||||| |
|
|
| T |
14688392 |
tgaggtgcacccagttcatgctggaccctgagccctgcatccctaccatccaaggtttgttgaagaatgccatggatgctggctctgtgaccgccctgta |
14688491 |
T |
|
| Q |
102 |
cttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaaaaaacgttgcgcgc |
201 |
Q |
| |
|
||||| || |||| |||||||||| ||||| ||| || |||| |||||| ||||||||||||||| ||||||||||||||||||| |||||| |||||| |
|
|
| T |
14688492 |
tttcgacgtgctgctgagggcgcttgacggtatcacacctgataccgctacactttttcatgatttttggtctcttttggagacaagaaacgtcgcgcgc |
14688591 |
T |
|
| Q |
202 |
tatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggttcgccgtcgattttgta |
301 |
Q |
| |
|
||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||| || |||||||| || | |
|
|
| T |
14688592 |
tatcgcagagatataacgggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattactgcctcctcggttggtccgtcgtcgattctgca |
14688691 |
T |
|
| Q |
302 |
ataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatgtcca |
386 |
Q |
| |
|
| |||||||||||||| | |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
14688692 |
acaactggcacaactggcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggatgagcaatatgatctcca |
14688776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 2 - 386
Target Start/End: Original strand, 7360394 - 7360778
Alignment:
| Q |
2 |
tgaggtgtacccaattcatgctggaccctaagccctgcattcctaccatccaaagcttgttgcagaatgctatggatgccggctctgtgaccgccctgta |
101 |
Q |
| |
|
||||||||||||| ||||||||||| ||| |||||||| | |||||||||||| | || ||| ||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
7360394 |
tgaggtgtacccagttcatgctggatcctgagccctgcgtccctaccatccaaggtttcttgaagaatgccatggatgctggctctgtgaccgctctgta |
7360493 |
T |
|
| Q |
102 |
cttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaaaaaacgttgcgcgc |
201 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||||||| || |||| ||||| ||||||||||||||||| |||||||||||||||| |||||| |||||| |
|
|
| T |
7360494 |
cttcgacgtactgctgagggcgcttgacggtgtcacacctgatgccgctgcactttttcatgatttcttgtctcttttggagacacgaaacgtcgcgcgc |
7360593 |
T |
|
| Q |
202 |
tatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggttcgccgtcgattttgta |
301 |
Q |
| |
|
||||| ||||| |||||||||| ||||||| |||||| ||||||||||||||||| |||||||| |||||||||| |||| | || |||||||| || | |
|
|
| T |
7360594 |
tatcgtagagacataacaggcgtggacacctctttccgtttcgtttcaggctggtataaaagattactgcctcctcggttgatccgtcgtcgattctgca |
7360693 |
T |
|
| Q |
302 |
ataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatgtcca |
386 |
Q |
| |
|
| |||||||||||||||| |||||||| ||||||||||||||||||||| ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
7360694 |
acaactggcacaactgtcgcggggatgtattgagacgtaactatcgaggctatcaccctgctgaggatgagcaatatgatctcca |
7360778 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 169 - 371
Target Start/End: Complemental strand, 10158015 - 10157805
Alignment:
| Q |
169 |
tggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcc |
268 |
Q |
| |
|
||||||||||||||||| || || |||||||| |||||||| |||||||| || |||||| ||| || |||||||||||||||||||||||||| || | |
|
|
| T |
10158015 |
tggtctcttttggagacgaagaatgttgcgcgttatcgcagggagataacgggaggggactcccactttcgcttcgtttcaggctggtacaaaaggttgc |
10157916 |
T |
|
| Q |
269 |
tg--------cctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccct |
360 |
Q |
| |
|
|| || || |||||| |||| |||||||| || || |||||||||||||| | || |||| || || || ||||||||||| | ||| ||| |
|
|
| T |
10157915 |
tgcccccccccccccccagttgattcgtcgtcgattctgcaacaactggcacaactgccctggatatgggttaaggcgcaactatcgaggatttcatcct |
10157816 |
T |
|
| Q |
361 |
gctgaggacga |
371 |
Q |
| |
|
||||||||||| |
|
|
| T |
10157815 |
gctgaggacga |
10157805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 281; Significance: 1e-157; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 281; E-Value: 1e-157
Query Start/End: Original strand, 2 - 386
Target Start/End: Complemental strand, 1730219 - 1729835
Alignment:
| Q |
2 |
tgaggtgtacccaattcatgctggaccctaagccctgcattcctaccatccaaagcttgttgcagaatgctatggatgccggctctgtgaccgccctgta |
101 |
Q |
| |
|
|||||||||| || ||||||||| ||||| ||||||| ||||||||| ||||| | ||| || ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
1730219 |
tgaggtgtactcagttcatgctgtaccctgagccctgtattcctaccgtccaaggtttgctgaagaatgctatggacgctggctctgtgaccgccctgta |
1730120 |
T |
|
| Q |
102 |
cttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaaaaaacgttgcgcgc |
201 |
Q |
| |
|
|||||||||||||| ||||| |||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
1730119 |
cttcgatgtactgctgagggtgcttaacgatgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaagaaacgtcgcgcgc |
1730020 |
T |
|
| Q |
202 |
tatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggttcgccgtcgattttgta |
301 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||||||||||||||| |||||||||||||| | |
|
|
| T |
1730019 |
tatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtataagagattactgcctcctcagttggtccgccgtcgattttgca |
1729920 |
T |
|
| Q |
302 |
ataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatgtcca |
386 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| |||||||||||||||| || |||||||||||||||||||||| |||| |
|
|
| T |
1729919 |
ataactggcacaactgtcacggggatggattgagacgcaactatcgaggttatcgccttgctgaggacgagcaatatgatctcca |
1729835 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 225; Significance: 1e-124; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 225; E-Value: 1e-124
Query Start/End: Original strand, 2 - 386
Target Start/End: Original strand, 14328923 - 14329307
Alignment:
| Q |
2 |
tgaggtgtacccaattcatgctggaccctaagccctgcattcctaccatccaaagcttgttgcagaatgctatggatgccggctctgtgaccgccctgta |
101 |
Q |
| |
|
||||||||||||| ||||||||||||||| |||||||||| ||||||||| || | ||| || ||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
14328923 |
tgaggtgtacccagttcatgctggaccctgagccctgcatccctaccatctaaggtttgctgaagaatgccatggatgctggctctgtgaccgctctgta |
14329022 |
T |
|
| Q |
102 |
cttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaaaaaacgttgcgcgc |
201 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||| ||| || |||| |||||| |||||||||||||||||||||||||||||||||| |||||| |||||| |
|
|
| T |
14329023 |
cttcgacgtactgctgagggcgcttgacggtatcacacctgatgccgctacactttttcatgatttctggtctcttttggagacacgaaacgtcgcgcgc |
14329122 |
T |
|
| Q |
202 |
tatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggttcgccgtcgattttgta |
301 |
Q |
| |
|
||||||||||| ||||| || | ||||||||||||||||||||||||||||||||| |||||||| |||||||||| |||| || | |||||||| || | |
|
|
| T |
14329123 |
tatcgcagagacataacgggtgtggacacccgtttccgcttcgtttcaggctggtataaaagattactgcctcctcggttgatttgtcgtcgattctgca |
14329222 |
T |
|
| Q |
302 |
ataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatgtcca |
386 |
Q |
| |
|
| |||||||||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| |||||||||||| |||| |
|
|
| T |
14329223 |
acaactggcacaactgtcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggatgagcaatatgatctcca |
14329307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 70 - 365
Target Start/End: Original strand, 18166626 - 18166922
Alignment:
| Q |
70 |
gctatggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttct |
169 |
Q |
| |
|
||||||||||| || ||||||||||| || ||||| |||||| ||| ||| |||||| ||||| ||| | |||| ||||| ||| || |||| || | |
|
|
| T |
18166626 |
gctatggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaactcttcaatgactttt |
18166725 |
T |
|
| Q |
170 |
ggtctcttttggagacaaaaaac-gttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcc |
268 |
Q |
| |
|
|||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||| ||| |||||||||||| |||||||||||||| | || | |
|
|
| T |
18166726 |
ggtctcttttggagacaaaaaaatgttgcgcgttatcgcagggagataacaggaggggactcccatttccgcttcgtctcaggctggtacaagcggttgc |
18166825 |
T |
|
| Q |
269 |
tgcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctga |
365 |
Q |
| |
|
||||||| ||||| || | |||||||| || || ||||||||||| |||| || |||||| | || |||||||||||||| | ||| |||||||| |
|
|
| T |
18166826 |
tgcctccccagttaatttgtcgtcgattctgcaacaactggcacaattgtcgtggagatggactaaggcgtaactatcgagggtttcatcctgctga |
18166922 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 177; Significance: 3e-95; HSPs: 4)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 177; E-Value: 3e-95
Query Start/End: Original strand, 2 - 386
Target Start/End: Complemental strand, 24954953 - 24954578
Alignment:
| Q |
2 |
tgaggtgtacccaattcatgctggaccctaagccctgcattcctaccatccaaagcttgttgcagaatgctatggatgccggctctgtgaccgccctgta |
101 |
Q |
| |
|
||||||||||||| |||||| |||||||| |||| ||||| |||||||||||| ||||| || ||||||| |||||||| |||||||||||||| ||||| |
|
|
| T |
24954953 |
tgaggtgtacccagttcatgttggaccctgagccttgcatccctaccatccaaggcttgctgaagaatgccatggatgctggctctgtgaccgctctgta |
24954854 |
T |
|
| Q |
102 |
cttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggtctcttttggagacaaaaaacgttgcgcgc |
201 |
Q |
| |
|
|||||| ||||||| |||||||||| ||||| ||| || |||| |||||| ||||||||||||||||||||||||| |||||||| |||||| ||||| |
|
|
| T |
24954853 |
cttcgacgtactgctgagggcgcttgacggtatcacacctgatgccgctacactttttcatgatttctggtctcttctggagacacgaaacgtcgcgcga |
24954754 |
T |
|
| Q |
202 |
tatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggttcgccgtcgattttgta |
301 |
Q |
| |
|
||||| |||| |||||||||| ||||||| ||||||||||||||||||||||||| |||||||| |||||||||| ||| | || |||||||| |
|
|
| T |
24954753 |
tatcgtcgagacataacaggcgtggacacctgtttccgcttcgtttcaggctggtataaaagattactgcctcctcgattgatccgtcgtcgatt----- |
24954659 |
T |
|
| Q |
302 |
ataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatgtcca |
386 |
Q |
| |
|
||| ||||||||| |||||||||||||||||| ||||||||||| ||||||||||||||||| ||||||||||| |||| |
|
|
| T |
24954658 |
----ctgcaacaactgtcgcggggatggattgagacgcaactatcgaggctatcaccctgctgaggataagcaatatgatctcca |
24954578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 66 - 365
Target Start/End: Original strand, 23621449 - 23621749
Alignment:
| Q |
66 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgat |
165 |
Q |
| |
|
||||||||||||||| || ||||||||||| || ||||| |||||| ||| ||| |||||| ||||| ||| | ||| ||||| ||| || ||| |
|
|
| T |
23621449 |
gaatgctatggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgacaccgctgaactcttcattgac |
23621548 |
T |
|
| Q |
166 |
ttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagat |
265 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| |||||| ||| |||||||||||||||| |||||||||| || | |
|
|
| T |
23621549 |
ttttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggggactcccatttccgcttcgtttcatgctggtacaagaggt |
23621648 |
T |
|
| Q |
266 |
tcctg-cctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctg |
364 |
Q |
| |
|
| ||| || || ||||| |||| |||||||| || || |||||||||||||||| || |||||||| || || ||||||| ||| | ||| ||||||| |
|
|
| T |
23621649 |
tgctgccccccccagttaattcgtcgtcgattctgcaacaactggcacaactgtcgtggagatggattaaggcgcaactatctagggtttcatcctgctg |
23621748 |
T |
|
| Q |
365 |
a |
365 |
Q |
| |
|
| |
|
|
| T |
23621749 |
a |
23621749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 71 - 365
Target Start/End: Original strand, 23195850 - 23196144
Alignment:
| Q |
71 |
ctatggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctg |
170 |
Q |
| |
|
|||||||||| || ||||||||||| || ||||| |||||| ||| ||| |||||| ||||| ||| | |||| ||||| ||| || |||| || || |
|
|
| T |
23195850 |
ctatggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaactcttcaatgacttttg |
23195949 |
T |
|
| Q |
171 |
gtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctg |
270 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||||||| ||||||| ||| |||||| ||| ||||||||| || |||||||||| || || || || |
|
|
| T |
23195950 |
gtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataataggaggggactcccatttccgctttgtctcaggctggtttaagaggttgttg |
23196049 |
T |
|
| Q |
271 |
cctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctga |
365 |
Q |
| |
|
||||| || || |||| |||||||| || || |||||||||||||||| || |||||| | || || ||||||||||| | ||| |||||||| |
|
|
| T |
23196050 |
cctccccaattaattcgtcgtcgattctgcaacaactggcacaactgtcgtggagatggactaaggcgcaactatcgagggtttcatcctgctga |
23196144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 73 - 365
Target Start/End: Complemental strand, 22643499 - 22643208
Alignment:
| Q |
73 |
atggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggt |
172 |
Q |
| |
|
|||||||| || ||||||||||| || ||||| |||||| ||| ||| |||||| ||||| ||| ||||| ||||| ||| || |||| || |||| |
|
|
| T |
22643499 |
atggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcatt-ttgataccgctgaactcttcaatgacttttggt |
22643401 |
T |
|
| Q |
173 |
ctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcc |
272 |
Q |
| |
|
||||||||||||||||||| ||||||| |||||||| |||| |||||| ||||| ||| ||||| |||||| | |||||||||||| || || || || |
|
|
| T |
22643400 |
ctcttttggagacaaaaaatgttgcgcattatcgcagggagacaacaggaggggagtcccatttccacttcgtcttaggctggtacaagaggttgcttcc |
22643301 |
T |
|
| Q |
273 |
tcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctga |
365 |
Q |
| |
|
||| |||| |||| |||||||| || || |||| ||||||||||| || |||||| | || || ||||||||||| | ||| |||||||| |
|
|
| T |
22643300 |
tcccaagttaattcgtcgtcgattctgcaacaactagcacaactgtcttggagatggactaaggcgcaactatcgagggtttcatcctgctga |
22643208 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 166; Significance: 1e-88; HSPs: 3)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 189 - 386
Target Start/End: Original strand, 41375532 - 41375729
Alignment:
| Q |
189 |
aaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggttcgc |
288 |
Q |
| |
|
|||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| ||||||||||| |
|
|
| T |
41375532 |
aaacgtcgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaagagattactgcctccttagttggttcgc |
41375631 |
T |
|
| Q |
289 |
cgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacgagcaatatgatgtcca |
386 |
Q |
| |
|
||||||||||| ||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
41375632 |
cgtcgattttgcaataactggtacaactgtcacggggatggattgagacgcaactatcgaggttatcaccctgctgaggacgagcaatatgatctcca |
41375729 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 143; E-Value: 5e-75
Query Start/End: Original strand, 73 - 386
Target Start/End: Complemental strand, 22081147 - 22080833
Alignment:
| Q |
73 |
atggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggt |
172 |
Q |
| |
|
|||||||| || ||||||||||| || |||||||| ||||||| |||||||||| | ||| ||| || |||| | ||| ||| |||||||||||||||| |
|
|
| T |
22081147 |
atggatgctggttctgtgaccgctctctacttcgacgtactgctgagggcgcttgatggtatcacacctgatactgctgaactctttcatgatttctggt |
22081048 |
T |
|
| Q |
173 |
ctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttca-ggctggtacaaaagattcctgc |
271 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||| | | ||||||||||| ||||| |||| |
|
|
| T |
22081047 |
ctcttttggagacaagaaacgtcgcgcgctatcgcagggagataacaggcggggatacccgtttccgcttcgtctaatggctggtacaagagattactgc |
22080948 |
T |
|
| Q |
272 |
ctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgaggacga |
371 |
Q |
| |
|
|||| ||||| | || |||||||| || || |||||||||||||||| ||||||||||||||| || ||||||||||| ||||| |||||||| || || |
|
|
| T |
22080947 |
ctccccagttaatccgtcgtcgattctgcaacaactggcacaactgtcgcggggatggattgaggcgcaactatcgagggtatcatcctgctgaagatga |
22080848 |
T |
|
| Q |
372 |
gcaatatgatgtcca |
386 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
22080847 |
acaatatgatctcca |
22080833 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 2 - 164
Target Start/End: Original strand, 41375370 - 41375532
Alignment:
| Q |
2 |
tgaggtgtacccaattcatgctggaccctaagccctgcattcctaccatccaaagcttgttgcagaatgctatggatgccggctctgtgaccgccctgta |
101 |
Q |
| |
|
||||||||||||| ||||||||||||||| ||||||||||||||||| ||||| ||||| || ||||||||||||| || |||||||||||||||||||| |
|
|
| T |
41375370 |
tgaggtgtacccagttcatgctggaccctgagccctgcattcctaccgtccaaggcttgctgaagaatgctatggacgctggctctgtgaccgccctgta |
41375469 |
T |
|
| Q |
102 |
cttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatga |
164 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
41375470 |
cttcgatgtactgctgagggcgcttaacggtgtcagacttgattccgctagactttttcatga |
41375532 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0051 (Bit Score: 101; Significance: 6e-50; HSPs: 1)
Name: scaffold0051
Description:
Target: scaffold0051; HSP #1
Raw Score: 101; E-Value: 6e-50
Query Start/End: Original strand, 65 - 365
Target Start/End: Complemental strand, 74618 - 74318
Alignment:
| Q |
65 |
agaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatga |
164 |
Q |
| |
|
|||| ||||||||||| || ||||||||||| || ||||| |||||| || ||| || ||| ||||| ||| || |||| ||||| ||| || |||| |
|
|
| T |
74618 |
agaacgctatggatgctggttctgtgaccgctctttactttgatgtaatggtgagagcacttgacggtatcacacctgataccgctgaactcttcaatga |
74519 |
T |
|
| Q |
165 |
tttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaaga |
264 |
Q |
| |
|
|| ||||||||||||||||| ||||| ||||||||||||||||| ||||||||||| |||||||||||||| |||||||| |||||||||||||| || |
|
|
| T |
74518 |
gttttggtctcttttggagacgaaaaatgttgcgcgctatcgcagggagataacaggaggggacacccgttttcgcttcgtctcaggctggtacaagagg |
74419 |
T |
|
| Q |
265 |
ttcctgcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctg |
364 |
Q |
| |
|
|| |||||||| |||| | || |||||||| || || |||||||||||||||| || |||||| | || |||||||| ||||| ||||| ||||||| |
|
|
| T |
74418 |
ttactgcctcccaagttaatccgtcgtcgattctgcaacaactggcacaactgtcgtggagatggactaaggcgtaactaccgagggtatcatcctgctg |
74319 |
T |
|
| Q |
365 |
a |
365 |
Q |
| |
|
| |
|
|
| T |
74318 |
a |
74318 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0108 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0108
Description:
Target: scaffold0108; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 368
Target Start/End: Complemental strand, 39089 - 38791
Alignment:
| Q |
70 |
gctatggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttct |
169 |
Q |
| |
|
||||||||||| || ||||||||||| || ||||| |||||| ||| ||| |||||| ||||| ||| | |||| ||||| |||||| |||| || | |
|
|
| T |
39089 |
gctatggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaacttttcaatgactttt |
38990 |
T |
|
| Q |
170 |
ggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcct |
269 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||||| ||||||| ||| | ||| ||| |||||||||| ||||||||||||||||||| || || |
|
|
| T |
38989 |
ggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataataggagaggattcccatttccgcttcatttcaggctggtacaaaaggttgct |
38890 |
T |
|
| Q |
270 |
gcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgagga |
368 |
Q |
| |
|
||| |||||||| ||||||||||||| || || |||||||| ||||| | || |||||| | || || ||||||||||| | ||| ||||||||||| |
|
|
| T |
38889 |
gccccctcagttaattcgccgtcgattctgcaacaactggcaaaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgctgagga |
38791 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0064 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: scaffold0064
Description:
Target: scaffold0064; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 70 - 368
Target Start/End: Original strand, 32649 - 32947
Alignment:
| Q |
70 |
gctatggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttct |
169 |
Q |
| |
|
||||||||||| || ||||||||||| || ||||| |||||| ||| ||| |||||| ||||| ||| | |||| ||||| |||||| |||| || | |
|
|
| T |
32649 |
gctatggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgcttgacggtatcactcctgataccgctgaacttttcaatgactttt |
32748 |
T |
|
| Q |
170 |
ggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcct |
269 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||||| ||||||| ||| | ||| ||| |||||||||| ||||||||||||||||||| || || |
|
|
| T |
32749 |
ggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataataggagaggattcccatttccgcttcatttcaggctggtacaaaaggttgct |
32848 |
T |
|
| Q |
270 |
gcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgagga |
368 |
Q |
| |
|
||| |||||||| ||||||||||||| || || |||||||| ||||| | || |||||| | || || ||||||||||| | ||| ||||||||||| |
|
|
| T |
32849 |
gccccctcagttaattcgccgtcgattctgcaacaactggcaaaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgctgagga |
32947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 84; Significance: 8e-40; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 66 - 368
Target Start/End: Original strand, 14562226 - 14562533
Alignment:
| Q |
66 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgat |
165 |
Q |
| |
|
|||||||||||| || |||||||||| ||| || ||||| |||||| ||| ||||||| || ||||| ||| | |||| || || |||||| |||| |
|
|
| T |
14562226 |
gaatgctatggacgctggctctgtgagcgctctttactttgatgtaatgctgagggcgattgacggtatcactcctgatgccactgaacttttcaatgac |
14562325 |
T |
|
| Q |
166 |
ttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagat |
265 |
Q |
| |
|
|| ||||||||||||||||| ||||| |||||||| |||||||| ||||||| ||| ||||| ||| |||||||||||||||||||||||||||||| | |
|
|
| T |
14562326 |
ttttggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataataggaggggattcccatttccgcttcgtttcaggctggtacaaaaggt |
14562425 |
T |
|
| Q |
266 |
tcctg-----cctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccct |
360 |
Q |
| |
|
| ||| || || ||||| ||||||||||||| || || |||||||||||||| | || |||||| | || || ||||||||||| | ||| ||| |
|
|
| T |
14562426 |
tgctgccccccccccccagttaattcgccgtcgattctgcaacaactggcacaactgccctggagatggactaaggcgcaactatcgaggatttcatcct |
14562525 |
T |
|
| Q |
361 |
gctgagga |
368 |
Q |
| |
|
|||||||| |
|
|
| T |
14562526 |
gctgagga |
14562533 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 70 - 368
Target Start/End: Original strand, 13284372 - 13284670
Alignment:
| Q |
70 |
gctatggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttct |
169 |
Q |
| |
|
|||||||| || |||||||||| ||| || ||||| |||||| ||| |||||||||| ||||| ||| | |||| || || ||| || |||| || | |
|
|
| T |
13284372 |
gctatggacgctggctctgtgagcgctctttactttgatgtaatgctgagggcgcttgacggtatcactcctgataccactgaactcttcaatgactttt |
13284471 |
T |
|
| Q |
170 |
ggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcct |
269 |
Q |
| |
|
|||||||||||||||| || || ||||| || |||||||| |||||||| || |||||| || ||| ||||||||||||||||||||||| || || || |
|
|
| T |
13284472 |
ggtctcttttggagacgaagaatgttgctcgttatcgcagggagataacgggaggggactcctattttcgcttcgtttcaggctggtacaagaggttgct |
13284571 |
T |
|
| Q |
270 |
gcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgagga |
368 |
Q |
| |
|
||| || |||| |||| || ||||| || || |||||||||||||| | || ||||| |||||||| ||||||||||| ||| ||||||||||| |
|
|
| T |
13284572 |
gcccccctagttaattcgtcgccgattctgcaacaactggcacaactgccctggagatgggttgagacgcaactatcgaggaattcatcctgctgagga |
13284670 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0319 (Bit Score: 78; Significance: 3e-36; HSPs: 1)
Name: scaffold0319
Description:
Target: scaffold0319; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 67 - 368
Target Start/End: Complemental strand, 19584 - 19284
Alignment:
| Q |
67 |
aatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatt |
166 |
Q |
| |
|
||||||||||| || |||||||||| ||| || ||||| |||||| | | || |||| || ||||| ||| | |||| || || |||||| |||| | |
|
|
| T |
19584 |
aatgctatggacgctggctctgtgagcgctctttactttgatgtaattctgatggcgattgacggtatcactcctgatgccactgaacttttcaatgact |
19485 |
T |
|
| Q |
167 |
tctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagatt |
266 |
Q |
| |
|
| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||| ||||| ||||||||||||||||||||| || || |
|
|
| T |
19484 |
tttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggggattcccatttccacttcgtttcaggctggtacaagaggtt |
19385 |
T |
|
| Q |
267 |
cctgcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgag |
366 |
Q |
| |
|
||||| || ||||| |||| |||||||| || || |||||||||||||| | || |||||| | || || ||||||||||| | ||| ||||| ||| |
|
|
| T |
19384 |
gctgcc-ccccagttaattcgtcgtcgattctgcaacaactggcacaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgccgag |
19286 |
T |
|
| Q |
367 |
ga |
368 |
Q |
| |
|
|| |
|
|
| T |
19285 |
ga |
19284 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0897 (Bit Score: 77; Significance: 1e-35; HSPs: 1)
Name: scaffold0897
Description:
Target: scaffold0897; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 73 - 365
Target Start/End: Original strand, 3846 - 4138
Alignment:
| Q |
73 |
atggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttctggt |
172 |
Q |
| |
|
|||||||| || ||||||||||| || ||||| |||||| ||| ||| ||||| |||| ||| | |||| ||||| ||| || |||| || |||| |
|
|
| T |
3846 |
atggatgctggttctgtgaccgctctttactttgatgtaatgctgagagcgctcgacggcatcactcctgataccgctgaactcttcaatgacttttggt |
3945 |
T |
|
| Q |
173 |
ctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcc |
272 |
Q |
| |
|
||||||||||||||||||| |||||||| |||||||| ||||||||||| ||||| ||| |||| |||| || ||| |||||||||| || || ||||| |
|
|
| T |
3946 |
ctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggggattcccatttctgctttgtctcatgctggtacaataggttgctgcc |
4045 |
T |
|
| Q |
273 |
tcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctga |
365 |
Q |
| |
|
||| | ||| ||||| ||| |||| || || |||||||||||||||| || |||||| | ||||| ||||||||||| | ||| |||||||| |
|
|
| T |
4046 |
tccccggttagttcgtcgttgattctgcaacaactggcacaactgtcgtggagatggactaagacgcaactatcgagggtttcatcctgctga |
4138 |
T |
|
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Target: scaffold0040 (Bit Score: 76; Significance: 5e-35; HSPs: 1)
Name: scaffold0040
Description:
Target: scaffold0040; HSP #1
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 161 - 368
Target Start/End: Complemental strand, 36072 - 35865
Alignment:
| Q |
161 |
atgatttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaa |
260 |
Q |
| |
|
|||| ||||||||||||||||||||||| || |||||||| |||||||| ||||||||||| |||||| ||| || ||||||||||||||||||||||| |
|
|
| T |
36072 |
atgacttctggtctcttttggagacaaagaatgttgcgcgttatcgcagggagataacaggaggggactcccactttcgcttcgtttcaggctggtacaa |
35973 |
T |
|
| Q |
261 |
aagattcctgcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccct |
360 |
Q |
| |
|
|| || ||||| || ||||| |||| || ||||| || || |||||||||||||| | | ||||| ||||||| ||||||||||| | ||| ||| |
|
|
| T |
35972 |
gaggttgctgccgccccagttaattcgtcgccgattctgcaacaactggcacaactgccctagagatgggctgagacgcaactatcgagggtttcatcct |
35873 |
T |
|
| Q |
361 |
gctgagga |
368 |
Q |
| |
|
|||||||| |
|
|
| T |
35872 |
gctgagga |
35865 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304 (Bit Score: 72; Significance: 1e-32; HSPs: 2)
Name: scaffold0304
Description:
Target: scaffold0304; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 66 - 365
Target Start/End: Original strand, 12276 - 12574
Alignment:
| Q |
66 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgat |
165 |
Q |
| |
|
|||||||||||| || |||||||||| ||| || ||||| ||||| ||| |||||||||| ||| | ||| | |||| || || |||||| |||| |
|
|
| T |
12276 |
gaatgctatggacgctggctctgtgagcgctctttactttcatgtaatgctgagggcgcttgacgatatcactcctgataccactgaacttttcaatgac |
12375 |
T |
|
| Q |
166 |
ttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagat |
265 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || ||| |||| |||| |||| |||||||||||| || | |
|
|
| T |
12376 |
ttttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggcgattcccatttctgctttgttttaggctggtacaagaggt |
12475 |
T |
|
| Q |
266 |
tcctgcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctga |
365 |
Q |
| |
|
| ||||| ||| |||| |||| |||||||| || || |||||||||||||| | || |||||| | || || ||||||||||| | ||| |||||||| |
|
|
| T |
12476 |
tgctgccccct-agttaattcgtcgtcgattctgaaacaactggcacaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgctga |
12574 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0304; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 66 - 365
Target Start/End: Original strand, 18027 - 18325
Alignment:
| Q |
66 |
gaatgctatggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgat |
165 |
Q |
| |
|
|||||||||||| || |||||||||| ||| || ||||| ||||| ||| |||||||||| ||| | ||| | |||| || || |||||| |||| |
|
|
| T |
18027 |
gaatgctatggacgctggctctgtgagcgctctttactttcatgtaatgctgagggcgcttgacgatatcactcctgataccactgaacttttcaatgac |
18126 |
T |
|
| Q |
166 |
ttctggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagat |
265 |
Q |
| |
|
|| ||||||||||||||||||||||| |||||||| |||||||| ||||||||||| || || ||| |||| |||| |||| |||||||||||| || | |
|
|
| T |
18127 |
ttttggtctcttttggagacaaaaaatgttgcgcgttatcgcagggagataacaggaggcgattcccatttctgctttgttttaggctggtacaagaggt |
18226 |
T |
|
| Q |
266 |
tcctgcctcctcagttggttcgccgtcgattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctga |
365 |
Q |
| |
|
| ||||| ||| |||| |||| |||||||| || || |||||||||||||| | || |||||| | || || ||||||||||| | ||| |||||||| |
|
|
| T |
18227 |
tgctgccccct-agttaattcgtcgtcgattctgaaacaactggcacaactgccctggagatggactaaggcgcaactatcgaggatttcatcctgctga |
18325 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0022 (Bit Score: 63; Significance: 3e-27; HSPs: 1)
Name: scaffold0022
Description:
Target: scaffold0022; HSP #1
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 70 - 260
Target Start/End: Complemental strand, 28798 - 28608
Alignment:
| Q |
70 |
gctatggatgccggctctgtgaccgccctgtacttcgatgtactgcggagggcgcttaacggtgtcagacttgattccgctagactttttcatgatttct |
169 |
Q |
| |
|
|||||||| || |||||||| | ||| || ||||| |||||| ||| |||||||||| ||||| ||| | |||| || || ||| || ||| || | |
|
|
| T |
28798 |
gctatggacgctggctctgtaagcgctctttactttgatgtaatgctgagggcgcttgacggtatcactcatgataccactgaactcttcattgactttt |
28699 |
T |
|
| Q |
170 |
ggtctcttttggagacaaaaaacgttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaa |
260 |
Q |
| |
|
|||||||||||||||| ||||| |||||||| |||||||| ||||||||||| |||||| ||| ||| ||||||||||||||||||||||| |
|
|
| T |
28698 |
ggtctcttttggagacgaaaaatgttgcgcgttatcgcagggagataacaggaggggactcccattttcgcttcgtttcaggctggtacaa |
28608 |
T |
|
Back To:
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Target: chr6 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 193 - 368
Target Start/End: Original strand, 19030294 - 19030469
Alignment:
| Q |
193 |
gttgcgcgctatcgcagagagataacaggcggggacacccgtttccgcttcgtttcaggctggtacaaaagattcctgcctcctcagttggttcgccgtc |
292 |
Q |
| |
|
|||| ||| |||||||| || ||||| || ||||| ||| || |||||||||| ||||||||| || || || ||||| | ||||| |||| |||| |
|
|
| T |
19030294 |
gttgtgcgttatcgcagggaaataacgggaggggattcccactttcgcttcgttttaggctggtataagaggttgctgcccctccagttaattcgtcgtc |
19030393 |
T |
|
| Q |
293 |
gattttgtaataactggcacaactgtcacggggatggattgagacgtaactatcgaggttatcaccctgctgagga |
368 |
Q |
| |
|
|||| || || |||||||||||||| | || ||||| | ||||| ||||||||||| | ||| ||||||||||| |
|
|
| T |
19030394 |
gattctgcaacaactggcacaactgccctggagatgggctaagacgcaactatcgagggtttcatcctgctgagga |
19030469 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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