View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_23 (Length: 371)
Name: NF8781_low_23
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_23 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 350; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 350; E-Value: 0
Query Start/End: Original strand, 10 - 371
Target Start/End: Original strand, 32483758 - 32484119
Alignment:
| Q |
10 |
tagattattctagaatattaattgcctgctatagctatagcataaatttttgcattctgttgtattgtcaaggttaactaattaacatagtcaaataata |
109 |
Q |
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| T |
32483758 |
tagattattctagaatattaattgcttgctatagctatagcataaatttttgcattctgttgtattgtcgaggttaattaattaacatagtcaaataata |
32483857 |
T |
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| Q |
110 |
ttatacaatatatgtctaatgacttttttgttttgttaaaaaataaaggcttagaggaagcaaattttcctgctgtggtaagctcaccagcggagttcag |
209 |
Q |
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| T |
32483858 |
ttatacaatatatgtctaatgacttttttgttttgttaaaaaataaaggcttagaggaagcaaattttcctgctgtggtaagctcaccagcggagttcag |
32483957 |
T |
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| Q |
210 |
gtgtgtaagggttagttcaattgatgatgcagatgataggtatgcatatcaaacggctgttaacattggaggacatttgttcaaaggaattctctatgat |
309 |
Q |
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| T |
32483958 |
gtgtgtaagggttagttcaattgatgatgcagatgataggtatgcatatcaaacggctgttaacattggaggacatttgttcaaaggaattctctatgat |
32484057 |
T |
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| Q |
310 |
tttggtccagaaagtagtaccaacaatagcaacaacaatagtaattataataatagtaatta |
371 |
Q |
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| T |
32484058 |
tttggtccagaaagtagtaccaacaatagcaacaacaatagtaattataataatagtaatta |
32484119 |
T |
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Target: chr3 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 256 - 309
Target Start/End: Complemental strand, 52766801 - 52766748
Alignment:
| Q |
256 |
tatcaaacggctgttaacattggaggacatttgttcaaaggaattctctatgat |
309 |
Q |
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| T |
52766801 |
tatcaaacggctgtgaacataggagggcatgttttcaaaggaattctctatgat |
52766748 |
T |
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