View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_25 (Length: 357)
Name: NF8781_low_25
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_25 |
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Alignment Details
Target: chr6 (Bit Score: 347; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 347; E-Value: 0
Query Start/End: Original strand, 1 - 351
Target Start/End: Complemental strand, 24652966 - 24652616
Alignment:
| Q |
1 |
agtccattctcatcagagtctcaaagctaaatcaatggacagttaggtaaggatagacaaaccaattcacacaacagagctcgatgtgaaaaagtcgaag |
100 |
Q |
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| T |
24652966 |
agtccattctcatcagagtctcaaagctaaatcaatggacagttaggtaaggatagacaaaccaattcacacaacagagctcgatgtgaaaaagtcgaag |
24652867 |
T |
|
| Q |
101 |
tcatggtggtggacattgagttgtttcaaccatgagtctgcagcactacatagatatgatatcttttcataatcatttggatcagtgtttagccaaagat |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
24652866 |
tcatggtggtggacattgagttgtttcaaccatgagtctgcagcactacatagatatgatatcttttcataatcatttggatcagtgtttagccaaagat |
24652767 |
T |
|
| Q |
201 |
cactctgcattttgtaagtggctagcccaaatggaggtagagaaatagagccactgttgtttttcttgcaatcctctcctacaatattttcccagccact |
300 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
24652766 |
cactctgcattttgtaagtggctagcccaaatggaggtagagaaatagagccactgttgtttttcttgcaatcgtctcctacaatattttcccagccact |
24652667 |
T |
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| Q |
301 |
ggaacaatattcatctttgtccatgtccatgaacatgttcatgatgtccat |
351 |
Q |
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| T |
24652666 |
ggaacaatattcatctttgtccatgtccatgaacatgttcatgatgtccat |
24652616 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 86 - 144
Target Start/End: Complemental strand, 34565256 - 34565198
Alignment:
| Q |
86 |
gtgaaaaagtcgaagtcatggtggtggacattgagttgtttcaaccatgagtctgcagc |
144 |
Q |
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|||||||||| ||||||||||||||| | |||||||| |||||||| ||||||||||| |
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| T |
34565256 |
gtgaaaaagttgaagtcatggtggtgagcgttgagttgcttcaaccacgagtctgcagc |
34565198 |
T |
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