View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_28 (Length: 345)
Name: NF8781_low_28
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_28 |
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| [»] scaffold0020 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 320; Significance: 1e-180; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 320; E-Value: 1e-180
Query Start/End: Original strand, 1 - 332
Target Start/End: Complemental strand, 30200252 - 30199921
Alignment:
| Q |
1 |
tcaccgttttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttcc |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30200252 |
tcaccgttttgcagtcatgcaccaaggttgcccttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttcc |
30200153 |
T |
|
| Q |
101 |
agtaaatcacaagtctgcagaggacaaattggaggtattattccatgctacttttgttgatttgattatgctgtttatacacttatccaatattgagata |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30200152 |
agtaaatcacaagtctgcagaggacaaattggaggtattattccatgctacttttgttgatttgattatgctgtttatacacttatccaatattgagata |
30200053 |
T |
|
| Q |
201 |
ttgcatctctgttttgttattagcttctttcaactagatttcattatagccctatagctattttagaatctgggcttggcctactggaacaatttggact |
300 |
Q |
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|
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30200052 |
ttgcatctctgttttgttattagcttctttcaactagatttcattatagcccaatagctattttagaatctgggcttggcctactggaacaatttggact |
30199953 |
T |
|
| Q |
301 |
gttgttagctttcagttgcacctagtgatgtc |
332 |
Q |
| |
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||||||||||||||||| |||||||||||||| |
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| T |
30199952 |
gttgttagctttcagttacacctagtgatgtc |
30199921 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 1 - 278
Target Start/End: Original strand, 51506804 - 51507080
Alignment:
| Q |
1 |
tcaccgttttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttcc |
100 |
Q |
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|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |
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| T |
51506804 |
tcaccattttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggtgagtgctttcgtttgacagaggaattccgtaaacttcc |
51506903 |
T |
|
| Q |
101 |
agtaaatcacaagtctgcagaggacaaattggaggtattattccatgctacttttgttgatttgattatgctgtttatacacttatccaatattgagata |
200 |
Q |
| |
|
|||||||||| ||| ||||||||||||||||||||| ||||| ||||||||||| |||||| ||||||||||||||| ||||||||||||||| |
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| T |
51506904 |
ggtaaatcacaggtccacagaggacaaattggaggtatgt---catgccacttttgttgaattgattcagctgtttatacacttgtccaatattgagata |
51507000 |
T |
|
| Q |
201 |
ttgcatct-ctgttttgttattagcttctttcaactagattt-cattatagccctatagctattttagaatctgggcttg |
278 |
Q |
| |
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|||||| | || ||| || |||||||||||||||||| ||| ||||||||| ||||| ||||||||| |||||||| |
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| T |
51507001 |
ttgcatgtcctatttcgtcgttagcttctttcaactaggtttatattatagcctaatagcagttttagaatttgggcttg |
51507080 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 9 - 111
Target Start/End: Original strand, 51463334 - 51463436
Alignment:
| Q |
9 |
ttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaatc |
108 |
Q |
| |
|
||||||||||||| ||||||||||||||||||||||||||||||| || |||| |||||||| ||||||||||||||||||||||| ||||| |||||| |
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| T |
51463334 |
ttgcagtcatgcatcaaggttgcacttgattttgtctctcctgaacatattggtgagtgcttccgtttgacagaggaattccgcaagcttccgataaatc |
51463433 |
T |
|
| Q |
109 |
aca |
111 |
Q |
| |
|
||| |
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|
| T |
51463434 |
aca |
51463436 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 7 - 100
Target Start/End: Original strand, 51486057 - 51486150
Alignment:
| Q |
7 |
ttttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttcc |
100 |
Q |
| |
|
||||| ||||||||| |||||| | ||||||||||||||| ||||||||||||||||||||||| |||||||| ||||||||||| || ||||| |
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| T |
51486057 |
ttttgtagtcatgcatcaaggtcggacttgattttgtctcacctgaaaatgttggcgagtgcttccgtttgactgaggaattccgtaagcttcc |
51486150 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 7 - 138
Target Start/End: Original strand, 27401308 - 27401439
Alignment:
| Q |
7 |
ttttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaa |
106 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
27401308 |
tttttcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggtgagtgcttccgtttgacagaggaattccgcaaacttccagtaaa |
27401407 |
T |
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| Q |
107 |
tcacaagtctgcagaggacaaattggaggtat |
138 |
Q |
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||||| ||| |||||||||||||||||||| |
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| T |
27401408 |
tcacaggtccatagaggacaaattggaggtat |
27401439 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 1 - 138
Target Start/End: Complemental strand, 20865792 - 20865655
Alignment:
| Q |
1 |
tcaccgttttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttcc |
100 |
Q |
| |
|
|||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||| || || ||||| ||||||||||||||| |||| |||||||| |
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| T |
20865792 |
tcactgttttgcagtcgtgcaccaaggttgcacttgattttgtctctcctgaaaatgtcggtgaatgcttccgtttgacagaggaaatccgtaaacttcc |
20865693 |
T |
|
| Q |
101 |
agtaaatcacaagtctgcagaggacaaattggaggtat |
138 |
Q |
| |
|
|||||||||| | | |||||||||||||| |||||| |
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| T |
20865692 |
agtaaatcactatttcacagaggacaaattgcaggtat |
20865655 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0020 (Bit Score: 86; Significance: 5e-41; HSPs: 1)
Name: scaffold0020
Description:
Target: scaffold0020; HSP #1
Raw Score: 86; E-Value: 5e-41
Query Start/End: Original strand, 9 - 110
Target Start/End: Complemental strand, 134536 - 134435
Alignment:
| Q |
9 |
ttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaatc |
108 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||| |||| |||||||||||||||| |
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| T |
134536 |
ttgcagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgctggcgagtgcttgcgtttgacagaggaaatccgtaaacttccagtaaatc |
134437 |
T |
|
| Q |
109 |
ac |
110 |
Q |
| |
|
|| |
|
|
| T |
134436 |
ac |
134435 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 83; Significance: 3e-39; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 83; E-Value: 3e-39
Query Start/End: Original strand, 12 - 138
Target Start/End: Original strand, 5178823 - 5178949
Alignment:
| Q |
12 |
cagtcatgcaccaaggttgcacttgattttgtctctcctgaaaatgttggcgagtgctttcgtttgacagaggaattccgcaaacttccagtaaatcaca |
111 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||| ||||| |||||||| | |||||||||||||||||| |||||| |||||||||||| |
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| T |
5178823 |
cagtcatgcgccaaggttgcacttgattttgtctctcctgaaaacgttggtgagtgcttccatttgacagaggaattccggaaacttacagtaaatcaca |
5178922 |
T |
|
| Q |
112 |
agtctgcagaggacaaattggaggtat |
138 |
Q |
| |
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||| |||||||||||||||||||| |
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| T |
5178923 |
ggtccatagaggacaaattggaggtat |
5178949 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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