View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_29 (Length: 325)
Name: NF8781_low_29
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_29 |
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Alignment Details
Target: chr4 (Bit Score: 278; Significance: 1e-155; HSPs: 5)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 14 - 307
Target Start/End: Original strand, 48833706 - 48833999
Alignment:
| Q |
14 |
tggacatcatattttagagagactaacatatattatatatttatctatggatctagctgggccaattggaagtttcacataggatttgatgtacgagctg |
113 |
Q |
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| T |
48833706 |
tggacatcatattttagagagactaacatatattatatatttatttatggatctagctgggccaattggaagtttcacataggatttgatgtacgagctg |
48833805 |
T |
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| Q |
114 |
gtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccatacca |
213 |
Q |
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| T |
48833806 |
gtgttataatatcattggcatcaacctacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccatacca |
48833905 |
T |
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| Q |
214 |
agatccatctgatgaattttactttaagactttctttgatgctggagagtttggatttggtttgtcaacggtgtctttgatacctaatcgtgat |
307 |
Q |
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| T |
48833906 |
agatccatctgatgaattttactttaagactttctttgatgctggagagtttgaatttggtttgtcaacggtgtctttgatacctaatcctgat |
48833999 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 71 - 307
Target Start/End: Complemental strand, 48790434 - 48790198
Alignment:
| Q |
71 |
tgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagag |
170 |
Q |
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| T |
48790434 |
tgggccaattggaagtttcatataggatttgatgtacgagctggtattgtaatatcccttgcatctatttatgatctagagaagcacatatatcgtagag |
48790335 |
T |
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| Q |
171 |
tattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttggatt |
270 |
Q |
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| T |
48790334 |
tattatacaaagggtacatttctgagttgtttgtgccataccaagatccaacagaagaattttactttaagacatttttcgattctggtgagtttggatt |
48790235 |
T |
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| Q |
271 |
tggtttgtcaacggtgtctttgatacctaatcgtgat |
307 |
Q |
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| T |
48790234 |
tggtctatcgactgtgtctttgatacccaaccgtgat |
48790198 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 71 - 306
Target Start/End: Complemental strand, 15825965 - 15825730
Alignment:
| Q |
71 |
tgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgtagag |
170 |
Q |
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| T |
15825965 |
tgggccaactggaagtttcatataggatttgatgtacgagctggtattataatatcacttgcatctatttacgaccttgaaaaacacaaatctcgtagag |
15825866 |
T |
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| Q |
171 |
tattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttggatt |
270 |
Q |
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| T |
15825865 |
tattatacaaagggtatatttctgagttgtttgtgccataccaagatccaacagaagagttttactttaagacatttttcgatgctggagagtatggatt |
15825766 |
T |
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| Q |
271 |
tggtttgtcaacggtgtctttgatacctaatcgtga |
306 |
Q |
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| T |
15825765 |
tggtcgatctactgtttctttgatacctaatcgtga |
15825730 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 68 - 307
Target Start/End: Complemental strand, 48816738 - 48816499
Alignment:
| Q |
68 |
agctgggccaattggaagtttcacataggatttgatgtacgagctggtgttataatatcattggcttcaacctacgatctagagaagcacaaatctcgta |
167 |
Q |
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| T |
48816738 |
agctgggccaactggaagtttcatataggatttgatgtacgagctggtatagtgatatcacttgcatctatttacgatctagagaaacataagtctcgcc |
48816639 |
T |
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| Q |
168 |
gagtattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttactttaagactttctttgatgctggagagtttgg |
267 |
Q |
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| T |
48816638 |
gtgtactctacaaaggctacatttccgagctatttgtgccttatcaagacccaaccgaagagttttactttaagactttctttgattctggagagtttgg |
48816539 |
T |
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| Q |
268 |
atttggtttgtcaacggtgtctttgatacctaatcgtgat |
307 |
Q |
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| T |
48816538 |
atttggtctgtcaacggtgtctttgatacctaatcgtgat |
48816499 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 140 - 307
Target Start/End: Complemental strand, 48808106 - 48807940
Alignment:
| Q |
140 |
tacgatctagagaagcacaaatctcgtagagtattatacaaaggatacatttctgaactttttgtgccataccaagatccatctgatgaattttacttta |
239 |
Q |
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| T |
48808106 |
tacgatatagagaaacacaagtttcgtcgtgtactctacaaagc-tacatttccgagctatttgtgccttatcaagacccaaccgaagaattttacttta |
48808008 |
T |
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| Q |
240 |
agactttctttgatgctggagagtttggatttggtttgtcaacggtgtctttgatacctaatcgtgat |
307 |
Q |
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| T |
48808007 |
agactttctttgattctggagagtttggatttgccctgtcaacggtgtctttgatacctaatcgtgat |
48807940 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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