View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_3 (Length: 552)
Name: NF8781_low_3
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_3 |
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Alignment Details
Target: chr6 (Bit Score: 496; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 536
Target Start/End: Complemental strand, 9346780 - 9346245
Alignment:
| Q |
1 |
tgctagagaatgttttatcacgtatagtcagttaaacacggatttaattatcagcgacataatagacacgtttaaggaaaagggcattttagtaattgca |
100 |
Q |
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|||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||||||| |
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| T |
9346780 |
tgctagagaatgttttatcacgtaaagtcagttaagcacggatttaattatcagcgacagaatagacacgtttaaggcaaagggcattttagtaattgca |
9346681 |
T |
|
| Q |
101 |
agcaaagagtatataagtatgttggagcaagaaacattcatttttcatgttgtttctctcactagaaactcttaagggcagaattttctcctccctctct |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9346680 |
agcaaagagtatataagtatgttggagcaagaaacattcatttttcatgttgtttctctcactagaaactcttaagggcagaattttctcctccctctct |
9346581 |
T |
|
| Q |
201 |
ctagaagatcgaattccacccttccatttttattcaatccttttgagttcaagactcttgggtgatcatggtttagagatgattcaagcatgaagacttc |
300 |
Q |
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||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9346580 |
ctagaaggtcgaattccacccttccatttttattcaatccttttgagttcaagactctagggtgatcatggtttagagatgattcaagcatgaagacttc |
9346481 |
T |
|
| Q |
301 |
atcattttggtcttaactcaatctcactcaaagttggatgatcttagcaagagagcatgcattagggtttgattgtagaagcttagaagtttgaagttgt |
400 |
Q |
| |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
9346480 |
atcattttggtcttaactcaatctcacttaaagttggatgatcttagcaagagagcatgcattagggtttgattgtagaagcttagaagtttgaagttgt |
9346381 |
T |
|
| Q |
401 |
accagaatcttaggtgagttctctagatagaaatccttcccttgaatgattatgttatgtgagaaaatcttaatgaacattagtttatgtatatccatga |
500 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
9346380 |
accagaatcttaggtgagttctctagatagaactccttcccttaaatgattatgttatgtgagaaaatcttaatgaacactagtttatgtatatccatga |
9346281 |
T |
|
| Q |
501 |
ttagtgccatctttatgtggattgttgttgaatgat |
536 |
Q |
| |
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|||||||||||||||||||||||||||||||||||| |
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| T |
9346280 |
ttagtgccatctttatgtggattgttgttgaatgat |
9346245 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 137 - 313
Target Start/End: Original strand, 6420859 - 6421037
Alignment:
| Q |
137 |
ttcatttttcatgt-tgtttctctcactagaaa-ctcttaagggcagaattttctcctccctctctctagaagatcgaattccacccttccatttttatt |
234 |
Q |
| |
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|||||||||| ||| |||||||||| ||| ||| |||||| || || ||||||||||| |||||||||||||| ||| ||||||||| ||| || | ||| |
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| T |
6420859 |
ttcatttttcttgtatgtttctctctctaaaaaactctta-ggacataattttctccttcctctctctagaaggtcgtattccacccctcctttgtcatt |
6420957 |
T |
|
| Q |
235 |
caatccttttgagttcaagactcttg---ggtgatcatggtttagagatgattcaagcatgaagacttcatcattttggtct |
313 |
Q |
| |
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|||||| ||||||| ||| ||||||| | |||||||||||||| ||||| |||||| ||||| |||||| ||||||||| |
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|
| T |
6420958 |
caatcc-tttgagtacaacactcttgagtgatgatcatggtttaggaatgatgcaagcaagaagatttcatc-ttttggtct |
6421037 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 275; Significance: 1e-153; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 275; E-Value: 1e-153
Query Start/End: Original strand, 6 - 372
Target Start/End: Complemental strand, 23296329 - 23295963
Alignment:
| Q |
6 |
gagaatgttttatcacgtatagtcagttaaacacggatttaattatcagcgacataatagacacgtttaaggaaaagggcattttagtaattgcaagcaa |
105 |
Q |
| |
|
||||||||||||||| ||| | | ||||| || |||||||||||||||||||| ||| |||||||||||| ||||| |||||||||||||||||||| |
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| T |
23296329 |
gagaatgttttatcaggtaaatttggttaagcatggatttaattatcagcgacaggataaacacgtttaaggcaaaggatattttagtaattgcaagcaa |
23296230 |
T |
|
| Q |
106 |
agagtatataagtatgttggagcaagaaacattcatttttcatgttgtttctctcactagaaactcttaagggcagaattttctcctccctctctctaga |
205 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
23296229 |
ggagtatataagtatgttggagcaagaaacattcatttttcatgttgtttctctcactagaaactcttaagggcagaattttctcctccctctctctaga |
23296130 |
T |
|
| Q |
206 |
agatcgaattccacccttccatttttattcaatccttttgagttcaagactcttgggtgatcatggtttagagatgattcaagcatgaagacttcatcat |
305 |
Q |
| |
|
||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||| |||| |
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| T |
23296129 |
agatcgaattccacccttccattattattcaatccttttgagttcaacactcttgggtgatcatggtttagagatgattcaagcatgatgacttcgtcat |
23296030 |
T |
|
| Q |
306 |
tttggtcttaactcaatctcactcaaagttggatgatcttagcaagagagcatgcattagggtttga |
372 |
Q |
| |
|
|||||||||||||||| |||| |||||||||||||||||||||||||||||| | ||||||||||| |
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|
| T |
23296029 |
tttggtcttaactcaagctcaatcaaagttggatgatcttagcaagagagcaagagttagggtttga |
23295963 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 363 - 432
Target Start/End: Original strand, 11244689 - 11244757
Alignment:
| Q |
363 |
tagggtttgattgtagaagcttagaagtttgaagttgtaccagaatcttaggtgagttctctagatagaa |
432 |
Q |
| |
|
||||||||| |||||||||| ||| ||||||||||| |||||||| ||||||||||||||||| |||| |
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|
| T |
11244689 |
tagggtttggttgtagaagcataggagtttgaagtt-taccagaaatctaggtgagttctctagaaagaa |
11244757 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 101; Significance: 8e-50; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 166 - 432
Target Start/End: Original strand, 29790030 - 29790297
Alignment:
| Q |
166 |
aaactcttaagggcagaattttctcctccctctctctagaagatcgaattccacccttccatttttattcaatccttttgagttcaagactcttgggtga |
265 |
Q |
| |
|
||||||||||| ||| |||||||||| ||||||||||||||| ||||||| ||||||||| || | ||||||||||||||||||||| |||||||||| | |
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|
| T |
29790030 |
aaactcttaagagcaaaattttctcccccctctctctagaaggtcgaatttcacccttcctttgtcattcaatccttttgagttcaaaactcttgggtaa |
29790129 |
T |
|
| Q |
266 |
tcatggtttagagatgattcaagcatgaagacttcatcattttggtct-taactcaatctcactcaaagttggatgatcttagcaag-agagcatgcatt |
363 |
Q |
| |
|
|||||||||||||||||||||||||||||| | || ||||||| || ||||||| || ||| |||||||||||||||| | ||| |||| | |
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| T |
29790130 |
tcatggtttagagatgattcaagcatgaaggttacacaattttgggctcaaactcaagcttactgaaagttggatgatcttggaaagctttacatgttct |
29790229 |
T |
|
| Q |
364 |
agggtttgattgtagaagcttagaagtttgaagttgtaccagaatcttaggtgagttctctagatagaa |
432 |
Q |
| |
|
|||||||| || |||| |||||||| |||||||| |||||||| ||||||||||||||||||||||| |
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|
| T |
29790230 |
agggtttggttttagagacttagaagcttgaagtt-caccagaattttaggtgagttctctagatagaa |
29790297 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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