View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8781_low_30 (Length: 324)
Name: NF8781_low_30
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_30 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 257; Significance: 1e-143; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 257; E-Value: 1e-143
Query Start/End: Original strand, 22 - 305
Target Start/End: Original strand, 38529273 - 38529557
Alignment:
| Q |
22 |
cagttccaatttcaatgcaattacatttgtgaaagttagtatggatggagctccttaccttcgtaaggttgacttgaagatgtacacaagttactcacag |
121 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38529273 |
cagttccaatttcaatgcaattacatttgtgaaagttagtatggatggagctccttaccttcgtaaggttgacttgaagatgtacacaagttactcacag |
38529372 |
T |
|
| Q |
122 |
ctttctgattccttaggcaaaatgttcagctccttcaccattggtacgtactacattcattaattattaagcttaattttacctttctcaatgttgatat |
221 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
38529373 |
ctttctgattccttaggcaaaatgttcagctccttcaccattggtacgtaatacattcattagttattaagcttaactttacctttctcaatgttgatat |
38529472 |
T |
|
| Q |
222 |
tgatcattgattaatgttatgtttatacta-taaggcaactgtgaatctcaaggaatgaaggatttcatgaatgagagtaagttg |
305 |
Q |
| |
|
||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38529473 |
tgatcattgattaatgttatgtttatataattaaggcaactgtgaatctcaaggaatgaaggatttcatgaatgagagtaagttg |
38529557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 62 - 167
Target Start/End: Complemental strand, 33902111 - 33902006
Alignment:
| Q |
62 |
atggatggagctccttaccttcgtaaggttgacttgaagatgtacacaagttactcacagctttctgattccttaggcaaaatgttcagctccttcacca |
161 |
Q |
| |
|
||||||||||| ||||||||||||||||||||||||| ||||||| || ||| | | | |||||| |||||| ||||||||||||||||||||||| |
|
|
| T |
33902111 |
atggatggagcaccttaccttcgtaaggttgacttgacaatgtacaaaacctacaaagatttatctgatgccttagccaaaatgttcagctccttcacca |
33902012 |
T |
|
| Q |
162 |
ttggta |
167 |
Q |
| |
|
||||| |
|
|
| T |
33902011 |
ctggta |
33902006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 47 - 161
Target Start/End: Complemental strand, 31339409 - 31339295
Alignment:
| Q |
47 |
tttgtgaaagttagtatggatggagctccttaccttcgtaaggttgacttgaagatgtacacaagttactcacagctttctgattccttaggcaaaatgt |
146 |
Q |
| |
|
|||||||||||||| ||||||||||| |||||||| ||||| || ||| | |||||||||| |||||| || |||| |||||| |||| | |||||||| |
|
|
| T |
31339409 |
tttgtgaaagttagcatggatggagcaccttacctccgtaaagtagacctcaagatgtacaagagttacccagagctctctgatgccttggccaaaatgt |
31339310 |
T |
|
| Q |
147 |
tcagctccttcacca |
161 |
Q |
| |
|
| | |||||| |||| |
|
|
| T |
31339309 |
ttaactcctttacca |
31339295 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 98
Target Start/End: Original strand, 15064116 - 15064165
Alignment:
| Q |
49 |
tgtgaaagttagtatggatggagctccttaccttcgtaaggttgacttga |
98 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||| | ||| ||||||||| |
|
|
| T |
15064116 |
tgtgaaagttagcatggatggagctccttaccttagaaagattgacttga |
15064165 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 261 - 301
Target Start/End: Complemental strand, 31338545 - 31338505
Alignment:
| Q |
261 |
tgtgaatctcaaggaatgaaggatttcatgaatgagagtaa |
301 |
Q |
| |
|
|||||||| ||||| || ||||||||||||||||||||||| |
|
|
| T |
31338545 |
tgtgaatcccaaggcattaaggatttcatgaatgagagtaa |
31338505 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University