View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8781_low_31 (Length: 323)
Name: NF8781_low_31
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_31 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 234; Significance: 1e-129; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 11 - 314
Target Start/End: Complemental strand, 17337845 - 17337540
Alignment:
| Q |
11 |
atggacatcacacgaaagggtagttaagagtgtaataagggacgtaattataaacatctagagctaagctttttgtgacttgtaagagggccataatcaa |
110 |
Q |
| |
|
|||||||| |||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
17337845 |
atggacataacacgaaaatgtagttaagagtgtaataagggacgtaattataaaaatctagagctaagcttgttgtgacttgtaagagggccataatcaa |
17337746 |
T |
|
| Q |
111 |
aatgtagtaatgctaaggatgttattcttnnnnnnn--ttgtagtatgcaagagagacgggagttatgataattaacttaggtgagcgtaattattgaaa |
208 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
17337745 |
aatgtagtaatgctaaggatgttattgttaaaaaaaaattgtagtatgcaagggagacgggagttatgataataaacttaggtgagcgtaattattgaaa |
17337646 |
T |
|
| Q |
209 |
tagtggacaaaatgatgttagaaagtaatagggtaaaaggggtaatgtgtatatcaaatagatgaggaaactagtgaatgttaaaagtaatcatggtggt |
308 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17337645 |
tagtggacaaaatgatgttagaaattaatagggtaaaaggggtaatgtctatatcaaatagatgaggaaactagtgaatgttaaaagtaatcatggtggt |
17337546 |
T |
|
| Q |
309 |
gatgtc |
314 |
Q |
| |
|
|||||| |
|
|
| T |
17337545 |
gatgtc |
17337540 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 84 - 116
Target Start/End: Original strand, 14208179 - 14208211
Alignment:
| Q |
84 |
tgtgacttgtaagagggccataatcaaaatgta |
116 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |
|
|
| T |
14208179 |
tgtgacttgcaagagggccataatcaaaatgta |
14208211 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University