View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_41 (Length: 253)
Name: NF8781_low_41
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_41 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 236
Target Start/End: Complemental strand, 2510543 - 2510311
Alignment:
| Q |
1 |
tcaattctcccagaatgattcagtacacctttctttccctttcttttcatttctttccattctgacatagatgccaaacctcgcactactatccttcctg |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2510543 |
tcaattctcccagaatgattcagtacacctttctttccctttcttttcatttctttccattctgacatagatgccaaacctcgcactactatccttcctg |
2510444 |
T |
|
| Q |
101 |
ctgagacctttgaacatctttcgagttttacagagttcatgttttccgctttaaccactgccttataatttatgttaacctgatgatgattatgtttttc |
200 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
2510443 |
ctgagacctttgaacatctttcgagttttacagagttcatgttttccgctttaaccactgccttagaatttatgttaacctga---tgattatgtttttt |
2510347 |
T |
|
| Q |
201 |
aggaagtttagagttcccttcagaatcagcttgaac |
236 |
Q |
| |
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||||||||||| |||||||||||||||||||||||| |
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| T |
2510346 |
aggaagtttagcgttcccttcagaatcagcttgaac |
2510311 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 29 - 236
Target Start/End: Complemental strand, 2512255 - 2512042
Alignment:
| Q |
29 |
ctttctttccctttcttttcatttctttccattctgacatagatgccaaacctcgcactactatccttcctgctgagacctttgaacatctttcgagttt |
128 |
Q |
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||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |||| |||||| |
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| T |
2512255 |
ctttctttccctttctttttatttctttccattctgacatagatgccaaacctcgcactactatccttcctgatgagacctttgaattacttttgagttt |
2512156 |
T |
|
| Q |
129 |
tacagagttcatgttttccgctttaaccactgccttataatttatgttaacctgatga------tgattatgtttttcaggaagtttagagttcccttca |
222 |
Q |
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||||| ||||||||||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||| ||||||| || |
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| T |
2512155 |
tacagtgttcatgttttccactttaaccactgccttagaatttatgttaacctgatgatgatgatgattatgtttttcaggaagtttagggttccctgca |
2512056 |
T |
|
| Q |
223 |
gaatcagcttgaac |
236 |
Q |
| |
|
|||||||||||||| |
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| T |
2512055 |
gaatcagcttgaac |
2512042 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 29 - 236
Target Start/End: Complemental strand, 2496086 - 2495879
Alignment:
| Q |
29 |
ctttctttccctttcttttcatttctttccattctgacatagatgccaaacctcgcactactatccttcctgctgagacctttgaacatctttcgagttt |
128 |
Q |
| |
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||||||||||||| |||| | || ||||||||||||| ||| |||||| |||||| | |||| |||| ||||||| | |||| ||||||||||| |
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| T |
2496086 |
ctttctttcccttactttcccttgctttccattctgatgtagccatcaaaccgtgcactaatttcctgcctgatgagaccatggaactactttcgagttt |
2495987 |
T |
|
| Q |
129 |
tacagagttcatgttttccgctttaaccactgccttataatttatgttaacctgatgatgattatgtttttcaggaagtttagagttcccttcagaatca |
228 |
Q |
| |
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||||| ||| |||||||| |||||||||||| ||||| |||||||||||||| || ||||||||| |||||||||||| ||| |||||||||||||||| |
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| T |
2495986 |
tacagtgttgatgttttctgctttaaccactaccttagaatttatgttaaccagaagatgattatatttttcaggaaggctagtgttcccttcagaatca |
2495887 |
T |
|
| Q |
229 |
gcttgaac |
236 |
Q |
| |
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|||||||| |
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|
| T |
2495886 |
gcttgaac |
2495879 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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