View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_44 (Length: 250)
Name: NF8781_low_44
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_44 |
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Alignment Details
Target: chr5 (Bit Score: 212; Significance: 1e-116; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 240
Target Start/End: Original strand, 36223062 - 36223302
Alignment:
| Q |
1 |
taactccatcaaaatagctaaccaaaaactaactgtttttaactactcnnnnnnnc-aactaacttgaattaaaatacaacaaaagtaagaattatacca |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223062 |
taactccatcaaaatagctaaccaaaaactaactgtttttaactactctttttttccaactaacttgaattaaaatacaacaaaagtaagaattatacca |
36223161 |
T |
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| Q |
100 |
tatttatcagttcctttcaacttatctttgatttatttagacaactcaagcacttctagtgtctgcacattgaacaaaacaattattcagcttgcaagag |
199 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223162 |
tatttatcagttcctttcaacttatctttgatttatttagacaactcaagcacttctagtgtctgcacattgaacaaaacaattattcagcttgcaagag |
36223261 |
T |
|
| Q |
200 |
aacaaacatcaattcccacaacaacaatctaataagtatta |
240 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |
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| T |
36223262 |
aacaaacatcaattcccacaacaacaatctaataagtatta |
36223302 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 176 - 237
Target Start/End: Original strand, 36227185 - 36227248
Alignment:
| Q |
176 |
aaacaattattcagcttgcaagagaacaaacatcaattccc--acaacaacaatctaataagta |
237 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||| |||| ||||||||||||||||||||| |
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| T |
36227185 |
aaacaattgttcagcttgcaagagaacaaacatcaactcccatacaacaacaatctaataagta |
36227248 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 2 - 47
Target Start/End: Original strand, 36227112 - 36227157
Alignment:
| Q |
2 |
aactccatcaaaatagctaaccaaaaactaactgtttttaactact |
47 |
Q |
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||||| ||||||||||||||| || ||||||||||||||||||||| |
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| T |
36227112 |
aactcgatcaaaatagctaacaaacaactaactgtttttaactact |
36227157 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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