View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8781_low_48 (Length: 244)

Name: NF8781_low_48
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8781_low_48
NF8781_low_48
[»] chr4 (2 HSPs)
chr4 (13-244)||(2510586-2510816)
chr4 (135-228)||(12461488-12461581)
[»] scaffold0128 (1 HSPs)
scaffold0128 (54-229)||(14547-14722)
[»] chr8 (3 HSPs)
chr8 (107-228)||(15063850-15063971)
chr8 (123-205)||(24272160-24272242)
chr8 (135-229)||(16217831-16217925)
[»] chr7 (1 HSPs)
chr7 (13-228)||(16366781-16366996)
[»] scaffold0113 (1 HSPs)
scaffold0113 (135-228)||(22412-22505)
[»] chr5 (1 HSPs)
chr5 (135-228)||(26059890-26059983)
[»] chr3 (3 HSPs)
chr3 (100-229)||(16015758-16015887)
chr3 (13-211)||(2281471-2281668)
chr3 (123-228)||(14264194-14264299)
[»] chr1 (1 HSPs)
chr1 (123-205)||(3257026-3257108)


Alignment Details
Target: chr4 (Bit Score: 216; Significance: 1e-119; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 216; E-Value: 1e-119
Query Start/End: Original strand, 13 - 244
Target Start/End: Complemental strand, 2510816 - 2510586
Alignment:
Q  13 acatcacatttaccacaatcattttcatggattctgaacataaactcatacccaataacatttagagcacataggttatggaatcaccaacaatcaacaa 112  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||||    
T  2510816 acatcacatttaccacaatcattttcatggattctcaacataaactcatacc-aataacatttagagcacataggttatggaatcactaacaatcaacaa 2510718  T
Q  113 taacttcacaattttcatcaagttaagctaaaatctcaaagcaaacaacttaacatatatcaacaatgaatttcatgcatcaataacaagttttcaacac 212  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2510717 taacttcacaattttcatcaagttaagctaaaatctcaaagcaaacaacttaacatatatcaacaatgaatttcatgcatcaataacaagttttcaacac 2510618  T
Q  213 ttttcgcatacccaaaactcataaaaacaaac 244  Q
    ||||||||||||||||||||||||||||||||    
T  2510617 ttttcgcatacccaaaactcataaaaacaaac 2510586  T

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Target: chr4; HSP #2
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 12461488 - 12461581
Alignment:
Q  135 ttaagctaaaatctcaaagcaaacaacttaacatatatcaacaatgaatttcatgcatcaataacaagttttcaacacttttcgcatacccaaa 228  Q
    |||||||||| ||||||||  ||||||||||||||||||||||||||| || ||||||||| ||| |||||||||||  ||||  |||||||||    
T  12461488 ttaagctaaattctcaaagtgaacaacttaacatatatcaacaatgaaatttatgcatcaacaacgagttttcaacaactttcatatacccaaa 12461581  T

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Target: scaffold0128 (Bit Score: 84; Significance: 5e-40; HSPs: 1)
Name: scaffold0128
Description:

Target: scaffold0128; HSP #1
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 54 - 229
Target Start/End: Complemental strand, 14722 - 14547
Alignment:
Q  54 aaactcatacccaataacatttagagcacataggttatggaatcaccaacaatcaacaataacttcacaattttcatcaagttaagctaaaatctcaaag 153  Q
    |||| |||||||||||||||||||||||||||||| ||  ||||| ||| ||||| ||| | | |||| | ||||| ||| ||||| |||| ||||||||    
T  14722 aaacacatacccaataacatttagagcacataggtcataaaatcaacaataatcatcaacatcatcacgagtttcaccaatttaagttaaattctcaaag 14623  T
Q  154 caaacaacttaacatatatcaacaatgaatttcatgcatcaataacaagttttcaacacttttcgcatacccaaaa 229  Q
     |||||| ||| |||||||||||||||||| ||||||||||| ||||| ||||||||||||||| |||||||||||    
T  14622 taaacaagttagcatatatcaacaatgaatgtcatgcatcaacaacaatttttcaacacttttcacatacccaaaa 14547  T

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Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 107 - 228
Target Start/End: Original strand, 15063850 - 15063971
Alignment:
Q  107 caacaataacttcacaattttcatcaagttaagctaaaatctcaaagcaaacaacttaacatatatcaacaatgaatttcatgcatcaataacaagtttt 206  Q
    |||||||| | |||| ||||||| ||| |||||||||| |||||||| |||||||||||||||||||||||||||| || ||||||||| ||||||||||    
T  15063850 caacaatatcatcaccattttcaccaatttaagctaaattctcaaagtaaacaacttaacatatatcaacaatgaaatttatgcatcaacaacaagtttt 15063949  T
Q  207 caacacttttcgcatacccaaa 228  Q
    |||||  |||| ||||||||||    
T  15063950 caacaactttcacatacccaaa 15063971  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 24272160 - 24272242
Alignment:
Q  123 attttcatcaagttaagctaaaatctcaaagcaaacaacttaacatatatcaacaat-gaatttcatgcatcaataacaagttt 205  Q
    ||||||| ||| |||||||||||||||||||  ||| |||||||||| | ||||||| |||||| | ||||||| |||||||||    
T  24272160 attttcaccaatttaagctaaaatctcaaagtgaaccacttaacatacaacaacaatagaattt-aagcatcaacaacaagttt 24272242  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 16217831 - 16217925
Alignment:
Q  135 ttaagctaaaatctcaaagcaaacaacttaacatatatcaacaatgaatttcatgcatcaataacaagttttcaacacttttcgcatacccaaaa 229  Q
    ||||||||||||||||||| || ||  | ||||  |||||| | |||| || | ||||||| |||||||||||||||  |||| |||||||||||    
T  16217831 ttaagctaaaatctcaaagtaatcacttcaacacttatcaatagtgaaatttaagcatcaacaacaagttttcaacaaatttcacatacccaaaa 16217925  T

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Target: chr7 (Bit Score: 64; Significance: 4e-28; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 64; E-Value: 4e-28
Query Start/End: Original strand, 13 - 228
Target Start/End: Original strand, 16366781 - 16366996
Alignment:
Q  13 acatcacatttaccacaatcattttcatggattctgaacataaactcatacccaataacatttagagcacataggttatggaatcaccaacaatcaacaa 112  Q
    |||||||||||| ||| ||||  |||||||||||| |||| ||||  |||||||| |||||||| ||| || |  | ||| | ||| ||  ||| |||||    
T  16366781 acatcacatttatcaccatcaaattcatggattctcaacacaaacatatacccaagaacatttatagctcacaattcatgaattcaacactaatgaacaa 16366880  T
Q  113 taacttcacaattttcatcaagttaagctaaaatctcaaagcaaacaacttaacatatatcaacaatgaatttcatgcatcaataacaagttttcaacac 212  Q
     ||| |||  || |||| ||| |||||||||  |||||||| |||||||||||||||||||||||||||| || ||||||||| || ||||||||||||     
T  16366881 caacatcatcatcttcaccaatttaagctaatttctcaaagtaaacaacttaacatatatcaacaatgaaatttatgcatcaacaataagttttcaacaa 16366980  T
Q  213 ttttcgcatacccaaa 228  Q
     ||||| |||||||||    
T  16366981 ctttcgtatacccaaa 16366996  T

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Target: scaffold0113 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 228
Target Start/End: Complemental strand, 22505 - 22412
Alignment:
Q  135 ttaagctaaaatctcaaagcaaacaacttaacatatatcaacaatgaatttcatgcatcaataacaagttttcaacacttttcgcatacccaaa 228  Q
    |||||||||| |||||||| ||||||||||||||||||||| |||||| || ||||||||| |||||||||||||||  |||| ||||| ||||    
T  22505 ttaagctaaactctcaaagtaaacaacttaacatatatcaataatgaaatttatgcatcaacaacaagttttcaacaactttcacatactcaaa 22412  T

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Target: chr5 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 135 - 228
Target Start/End: Original strand, 26059890 - 26059983
Alignment:
Q  135 ttaagctaaaatctcaaagcaaacaacttaacatatatcaacaatgaatttcatgcatcaataacaagttttcaacacttttcgcatacccaaa 228  Q
    |||||||||| |||||||  |||||||||||||||| ||||||||||| |||||||||||| | |||||||||||||  |||| ||||||||||    
T  26059890 ttaagctaaattctcaaactaaacaacttaacatatgtcaacaatgaaattcatgcatcaacaccaagttttcaacaactttcacatacccaaa 26059983  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 100 - 229
Target Start/End: Complemental strand, 16015887 - 16015758
Alignment:
Q  100 caacaatcaacaataacttcacaattttcatcaagttaagctaaaatctcaaagcaaacaacttaacatatatcaacaatgaatttcatgcatcaataac 199  Q
    ||||| |||| || ||| |||| ||||||| ||| |||||||| ||||||||||  | | ||| | | |||||||||||| || |||||||||||| |||    
T  16015887 caacattcaataagaacatcaccattttcaccaatttaagctagaatctcaaagtcatcgactcatcttatatcaacaataaaattcatgcatcaacaac 16015788  T
Q  200 aagttttcaacacttttcgcatacccaaaa 229  Q
    |||||||||||| ||||| |||||||||||    
T  16015787 aagttttcaacaattttcacatacccaaaa 16015758  T

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Target: chr3; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 13 - 211
Target Start/End: Original strand, 2281471 - 2281668
Alignment:
Q  13 acatcacatttaccacaatcattttcatggattctgaacataaactcatacccaataacatttagagcacataggttatggaatcaccaacaatcaacaa 112  Q
    |||||||||| ||||||||||  |||||||||||| |||| ||||  ||||||| ||||||||| |||| | |  | ||| | ||| ||  || ||||||    
T  2281471 acatcacattcaccacaatcaaattcatggattcttaacacaaacatataccca-taacatttatagcatacaaatcatgaattcaacattaaacaacaa 2281569  T
Q  113 taacttcacaattttcatcaagttaagctaaaatctcaaagcaaacaacttaacatatatcaacaatgaatttcatgcatcaataacaagttttcaaca 211  Q
     | | |||  |||| || ||| |||||||||| | ||||||  ||||||||| ||||||||||||||||| || | ||||||| |||||||||||||||    
T  2281570 caccatcatcatttacaccaatttaagctaaattttcaaagtgaacaacttagcatatatcaacaatgaaatttaagcatcaacaacaagttttcaaca 2281668  T

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Target: chr3; HSP #3
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 123 - 228
Target Start/End: Original strand, 14264194 - 14264299
Alignment:
Q  123 attttcatcaagttaagctaaaatctcaaagcaaacaacttaacatatatcaacaatgaatttcatgcatcaataacaagttttcaacacttttcgcata 222  Q
    ||||||| ||| |||||||| ||||||||||  | ||| | | ||||| ||||||| ||| |||||||||||| || |||||||||||| ||||| ||||    
T  14264194 attttcaccaatttaagctagaatctcaaagtcatcaattcatcatatgtcaacaacgaaattcatgcatcaacaaaaagttttcaacaattttcacata 14264293  T
Q  223 cccaaa 228  Q
    | ||||    
T  14264294 ctcaaa 14264299  T

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Target: chr1 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 123 - 205
Target Start/End: Original strand, 3257026 - 3257108
Alignment:
Q  123 attttcatcaagttaagctaaaatctcaaagcaaacaacttaacatatatcaacaatgaatttcatgcatcaataacaagttt 205  Q
    ||||||||||||||||||||||| | || ||  | |||||||||||||   ||| |||||||||||||| ||| |||||||||    
T  3257026 attttcatcaagttaagctaaaaacacatagttatcaacttaacatattcaaaccatgaatttcatgcaacaacaacaagttt 3257108  T

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