View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_5 (Length: 532)
Name: NF8781_low_5
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 397; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 397; E-Value: 0
Query Start/End: Original strand, 20 - 454
Target Start/End: Complemental strand, 28524681 - 28524250
Alignment:
| Q |
20 |
ggaactctttcaaataacagccagattataaatttataatataagaacgatttggttatagaggtacaccgaagggtacacagttacaacgtgcacacat |
119 |
Q |
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| T |
28524681 |
ggaactctttcaaataacagccagattataaatttataatataagagcgatttggttatagaggtacaccgaagggtacacagttacaacttgcacacat |
28524582 |
T |
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| Q |
120 |
tatctataagcattgacaccaaacacaatactaacaccgacatcagtaataatttgaaaaaatgaattgatagaatgcaatcacatgtgtccatgcctca |
219 |
Q |
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| T |
28524581 |
tatctataagcattgacaccaaacacaatactaacaccgacatcagtaataatttgaaaaaatgaaatgatagaatgtaatcacatgtgtccatgcctca |
28524482 |
T |
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| Q |
220 |
ccaccagacacaaattcaatcagaggtgtcggtaatcataccagatttgaccaatttatatataaactttatttcccatgtttcaatagttacttttatt |
319 |
Q |
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| T |
28524481 |
ccaccagacacaaatccaatcagaggtgtcggtaatcataccagatttgaccaatttatatataaactttatttcccatgtttcaatagttacttttatt |
28524382 |
T |
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| Q |
320 |
ccttaaaataataaaatagtacgtgtgattttgttaagattaaccttgtatttccaccatttctactagacatttgatatatgtgtagcaccgacatttc |
419 |
Q |
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| T |
28524381 |
ccttaaa---ataaaatagtacgtgtgattttgttaagattaaccatgtatttccaccatttctactagacatttgatatatgtgtagcaccgacatttc |
28524285 |
T |
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| Q |
420 |
tgacggaacttggaaggtgtaccggtgtcagacac |
454 |
Q |
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| T |
28524284 |
tgacggaacttggaaggtgtaccggtgtcagacac |
28524250 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 481 - 520
Target Start/End: Complemental strand, 28524221 - 28524182
Alignment:
| Q |
481 |
caaattcttatggttgtatcagtgtcgtcgtgttgatgtc |
520 |
Q |
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| T |
28524221 |
caaattcttacggttgtatcagtgccgtcgtgttgatgtc |
28524182 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000007; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 190
Target Start/End: Complemental strand, 12440501 - 12440469
Alignment:
| Q |
158 |
gacatcagtaataatttgaaaaaatgaattgat |
190 |
Q |
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| T |
12440501 |
gacatcactaataatttgaaaaaatgaattgat |
12440469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 36768908 - 36768856
Alignment:
| Q |
158 |
gacatcagtaataatttgaaaaaatgaattgatagaatgcaatcacatgtgtc |
210 |
Q |
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| T |
36768908 |
gacatcagtaataatttgagagaattaattaattgaatgtaatcacatgtgtc |
36768856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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