View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_56 (Length: 210)
Name: NF8781_low_56
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_56 |
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Alignment Details
Target: chr5 (Bit Score: 174; Significance: 8e-94; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 174; E-Value: 8e-94
Query Start/End: Original strand, 18 - 195
Target Start/End: Complemental strand, 5178316 - 5178139
Alignment:
| Q |
18 |
gattcttcagtttatctaggtaagatttccaaatgttaagaatgtgtttcttttccttatgatgatagaaaaagaggaacatttatgtgtataagtaact |
117 |
Q |
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| T |
5178316 |
gattcttcagtttatctaggtaagatttccaaatgttaagaatgtgtttcttttccttatgatgatagaaaaagaggaacatttatgtgtataagtaagt |
5178217 |
T |
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| Q |
118 |
ccaagaattttattgtaggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtatt |
195 |
Q |
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| T |
5178216 |
ccaagaattttattgtaggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtatt |
5178139 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000003
Query Start/End: Original strand, 133 - 195
Target Start/End: Original strand, 40190009 - 40190071
Alignment:
| Q |
133 |
taggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtatt |
195 |
Q |
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| T |
40190009 |
taggtggttatgatatggaagaaaaagctgctagagcttatgatcaagcagcactcaagtatt |
40190071 |
T |
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Target: chr1 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 134 - 195
Target Start/End: Complemental strand, 4846707 - 4846646
Alignment:
| Q |
134 |
aggtggttatgatatagaagaaaaagctgcaagagcttatgatatggctgcactcaagtatt |
195 |
Q |
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| T |
4846707 |
aggtggttatgatatggaagagaaagctgcaagagcttatgatcttgctgctctcaaatatt |
4846646 |
T |
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Target: chr3 (Bit Score: 35; Significance: 0.00000000007; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 134 - 176
Target Start/End: Original strand, 47753423 - 47753465
Alignment:
| Q |
134 |
aggtggttatgatatagaagaaaaagctgcaagagcttatgat |
176 |
Q |
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| T |
47753423 |
aggtggttatgatatggaagagaaagctgcaagagcttatgat |
47753465 |
T |
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