View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8781_low_57 (Length: 209)
Name: NF8781_low_57
Description: NF8781
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8781_low_57 |
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Alignment Details
Target: chr4 (Bit Score: 146; Significance: 4e-77; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 146; E-Value: 4e-77
Query Start/End: Original strand, 18 - 193
Target Start/End: Original strand, 340628 - 340807
Alignment:
| Q |
18 |
tactcctccaagatctttacgcggaggcattccaatatgttttcctcaagtacgtgtatc---ttataaagcttgtatgttttggtttattgttttttct |
114 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||| |
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| T |
340628 |
tactcctccaagatctttacgcggaggcattccaatatgttttcctcaagtacgtgtatcatcttatagagcttgtatgtttttgtttattgttttttct |
340727 |
T |
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| Q |
115 |
ttaagtactttatatt-atccatatgcagttctcaaattttggtactcttgaacatcatggatttgcaaggaacaagttg |
193 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
340728 |
ttaagtactttatatccatccatatgcagttctcaaattttggtactcttgaacatcatggatttgcaaggaacaagttg |
340807 |
T |
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