View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8782_high_2 (Length: 686)

Name: NF8782_high_2
Description: NF8782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8782_high_2
NF8782_high_2
[»] chr2 (1 HSPs)
chr2 (1-668)||(5048952-5049619)


Alignment Details
Target: chr2 (Bit Score: 664; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 664; E-Value: 0
Query Start/End: Original strand, 1 - 668
Target Start/End: Original strand, 5048952 - 5049619
Alignment:
Q  1 tgaaatatgcacctatagcttacaataatatggaatactgaattatacctgaagctcacttgaatgatttgaggctgctgcacttggttgaatattttca 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5048952 tgaaatatgcacctatagcttacaataatatggaatactgaattatacctgaagctcacttgaatgatttgaggctgctgcacttggttgaatattttca 5049051  T
Q  101 aactcgaaaaaagagatgaaaatagaatcaagaaggaaaagacaacccaacaatccaaacatgagaacaatagttctaatgttcttttttccaacataga 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5049052 aactcgaaaaaagagatgaaaatagaatcaagaaggaaaagacaacccaacaatccaaacatgagaacaatagttctaatgttcttttttccaacataga 5049151  T
Q  201 atcccttaatagaattgtactttgaagaatcatttttcagaccatgtagcaacaaagttttcgaatgccaacgacaatcaaccgctgtcatcctcttcca 300  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5049152 atcccttaatagaattgtactttgaagaatcatttttcagaccatgtagcaacaaagttttcgaatgccaacgacaatcaaccgctgtcatcctcttcca 5049251  T
Q  301 tgaaggtggatcattgcttgttatcttgtaatctttattcattcctaacattcctctagcagcacccttacattcaggagttggtcttctaggagaccct 400  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5049252 tgaaggtggatcattgcttgttatcttgtaatctttattcattcctaacattcctctagcagcacccttacattcaggagttggtcttctaggagaccct 5049351  T
Q  401 tgttttcccattatactatcattaatcttgtaaaattttttcttatatgtgatgaatgcaaatatatgatcaaggaccaatatggacatagaaaaaagag 500  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5049352 tgttttcccattatactatcattaatcttgtaaatttttttcttatatgtgatgaatgcaaatatatgatcaaggaccaatatggacatagaaaaaagag 5049451  T
Q  501 tagagttttgttgtatgaattggaagtgaagcgaagaagtaggtgataaggatatgtgactaagaaagttgatgaaatgaatgagtgaaatcaaagcgaa 600  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5049452 tagagttttgttgtatgaattggaagtgaagcgaagaagtaggtgataaggatatgtgactaagaaagttgatgaaatgaatgagtgaaatcaaagcgaa 5049551  T
Q  601 aaatgaaaactcaacctatgtattaggaacttgtcttatgaaacaagaatcatcaaattagatatatt 668  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  5049552 aaatgaaaactcaacctatgtattaggaacttgtcttatgaaacaagaatcatcaaattagatatatt 5049619  T

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