View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8782_low_11 (Length: 265)

Name: NF8782_low_11
Description: NF8782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8782_low_11
NF8782_low_11
[»] chr6 (11 HSPs)
chr6 (19-252)||(6466360-6466593)
chr6 (92-250)||(6529228-6529386)
chr6 (64-250)||(6506515-6506701)
chr6 (74-250)||(6472013-6472189)
chr6 (90-250)||(6519559-6519719)
chr6 (91-250)||(6460811-6460970)
chr6 (102-250)||(6497702-6497850)
chr6 (102-250)||(6515090-6515238)
chr6 (109-246)||(7204116-7204254)
chr6 (109-246)||(7238867-7239005)
chr6 (101-239)||(6458416-6458554)
[»] chr7 (3 HSPs)
chr7 (119-252)||(9664318-9664451)
chr7 (68-239)||(3752795-3752966)
chr7 (68-240)||(4047271-4047443)
[»] chr4 (1 HSPs)
chr4 (119-252)||(13535342-13535475)


Alignment Details
Target: chr6 (Bit Score: 213; Significance: 1e-117; HSPs: 11)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 19 - 252
Target Start/End: Complemental strand, 6466593 - 6466360
Alignment:
Q  19 agtgcaaccaccatctccaacaatgcatcatttcaccnnnnnnnccaaacctttcctattcccacagactcattccacggtcctccctgaccccacaaac 118  Q
    |||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6466593 agtgcaaccaccatctccaacaatgcatcatttcaccaaaaaaaccaaacctttcctattcccacagactcattccacggtcctccctgaccccacaaac 6466494  T
Q  119 ttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccat 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6466493 ttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccat 6466394  T
Q  219 atctcatcaaatcttcaaactcatcactttctct 252  Q
    ||||||||||||||||||||||||||||||||||    
T  6466393 atctcatcaaatcttcaaactcatcactttctct 6466360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 127; E-Value: 1e-65
Query Start/End: Original strand, 92 - 250
Target Start/End: Complemental strand, 6529386 - 6529228
Alignment:
Q  92 tccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatg 191  Q
    ||||| ||||| ||||||||| | || ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||    
T  6529386 tccactgtccttcctgacccctccaaattcttctctccaaatctgctatccacacccctccctacaaactctttcttccaaaactttgttctcaacaatg 6529287  T
Q  192 gtgaccaacctgaatacattcatccatatctcatcaaatcttcaaactcatcactttct 250  Q
    |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  6529286 gtgaccaacctgaatacattcatccatatctcatcaaatcttcagactcatcactttct 6529228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 64 - 250
Target Start/End: Complemental strand, 6506701 - 6506515
Alignment:
Q  64 caaacctttcctattcccacagactcattccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactct 163  Q
    ||||||||| |||||||||||   | ||||||| ||||||||||||||| | || |||||||||||||||||||||||||||||||| || |||||||||    
T  6506701 caaaccttttctattcccacaaggtaattccactgtcctccctgacccctccaaattcttctctccaaatctgctatccacacccctgcctacaaactct 6506602  T
Q  164 ttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaactcatcactttct 250  Q
    ||||||||||||||||||||||| ||||||||   |||||||||| ||||||| || ||||||||||| ||||||||||||||||||    
T  6506601 ttcttccaaaactttgttctcaacaatggtgatgcacctgaatactttcatccttacctcatcaaatcatcaaactcatcactttct 6506515  T

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Target: chr6; HSP #4
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 74 - 250
Target Start/End: Original strand, 6472013 - 6472189
Alignment:
Q  74 ctattcccacagactcattccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaa 173  Q
    |||||||||||||  || ||||| || |||||||||||| | || |||||||| |||||| ||||||||||||||||||| |||||||||||||||||||    
T  6472013 ctattcccacagatacaatccactgttctccctgacccctccaaattcttctcaccaaatttgctatccacacccctccctacaaactctttcttccaaa 6472112  T
Q  174 actttgttctcaaaaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaactcatcactttct 250  Q
    || |||| || |||||||||||||||||||||||||||||||| || ||||||||||| ||||||||||||||||||    
T  6472113 acattgtcctaaaaaatggtgaccaacctgaatacattcatccttacctcatcaaatcatcaaactcatcactttct 6472189  T

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Target: chr6; HSP #5
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 90 - 250
Target Start/End: Original strand, 6519559 - 6519719
Alignment:
Q  90 attccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaa 189  Q
    ||||||| |||| |||||||||| | || ||||||||||||||| | ||||||| ||||||||| |||||||||||||||||||||||||||||||||||    
T  6519559 attccactgtccaccctgacccctccaaattcttctctccaaatttactatccaaacccctccctacaaactctttcttccaaaactttgttctcaaaaa 6519658  T
Q  190 tggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaactcatcactttct 250  Q
     ||||||||||||||||| ||||||||||| ||||| ||||| ||||||||||||||||||    
T  6519659 cggtgaccaacctgaatatattcatccatacctcattaaatcatcaaactcatcactttct 6519719  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 91 - 250
Target Start/End: Original strand, 6460811 - 6460970
Alignment:
Q  91 ttccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaat 190  Q
    |||||| ||||||||||||||| | || ||||||||| ||||||||||||||| ||| ||||| |||||||| ||||||||||||||||||||| | |||    
T  6460811 ttccactgtcctccctgacccctccaaattcttctcttcaaatctgctatccaaaccactccctacaaactccttcttccaaaactttgttctcgacaat 6460910  T
Q  191 ggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaactcatcactttct 250  Q
    ||||||||||| |||||| ||||||| || ||||||| |||||| |||||||| ||||||    
T  6460911 ggtgaccaaccggaatactttcatccttacctcatcagatcttccaactcatctctttct 6460970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 102 - 250
Target Start/End: Complemental strand, 6497850 - 6497702
Alignment:
Q  102 tccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacc 201  Q
    |||| |||||| | || |||||||||  |||||||||||| | |||||||||||||||||||||||||||||||||||||||||| || |||||||||||    
T  6497850 tcccagacccctccaaattcttctctaaaaatctgctatctaaacccctccccacaaactctttcttccaaaactttgttctcaacaacggtgaccaacc 6497751  T
Q  202 tgaatacattcatccatatctcatcaaatcttcaaactcatcactttct 250  Q
    ||||||  ||||||| || ||||||||||| ||| ||||||||||||||    
T  6497750 tgaatattttcatccttacctcatcaaatcatcagactcatcactttct 6497702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 102 - 250
Target Start/End: Original strand, 6515090 - 6515238
Alignment:
Q  102 tccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacc 201  Q
    ||||||| ||| | || |||||||| |||||||| ||||| ||||||||||||||||||||||||||||||||||||  ||||| | | |||||   |||    
T  6515090 tccctgatccctccaagttcttctccccaaatcttctatctacacccctccccacaaactctttcttccaaaacttttctctcagagagggtgaaacacc 6515189  T
Q  202 tgaatacattcatccatatctcatcaaatcttcaaactcatcactttct 250  Q
    ||||||||| ||||| || ||||||| |||  |||||||||||||||||    
T  6515190 tgaatacatccatccttacctcatcagatcaacaaactcatcactttct 6515238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 7204116 - 7204254
Alignment:
Q  109 ccccacaaacttcttctctccaaatctgctatccacacccc-tccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaata 207  Q
    |||| ||||||||||||  | |||||  ||||||||||||| ||||||| |  |||||||||||||||||||||||||  ||||||||||||||||||||    
T  7204116 cccctcaaacttcttcttccgaaatcatctatccacaccccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaata 7204215  T
Q  208 cattcatccatatctcatcaaatcttcaaactcatcact 246  Q
    ||||||||| || ||||| ||||| || |||||| ||||    
T  7204216 cattcatccctacctcattaaatcatcgaactcaccact 7204254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 109 - 246
Target Start/End: Original strand, 7238867 - 7239005
Alignment:
Q  109 ccccacaaacttcttctctccaaatctgctatccacacccc-tccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaata 207  Q
    |||| ||||||||||||  | |||||  ||||||||||||| ||||||| |  |||||||||||||||||||||||||  ||||||||||||||||||||    
T  7238867 cccctcaaacttcttcttccgaaatcatctatccacaccccctccccactatttctttcttccaaaactttgttctcatcaatggtgaccaacctgaata 7238966  T
Q  208 cattcatccatatctcatcaaatcttcaaactcatcact 246  Q
    ||||||||| || ||||| ||||| || |||||| ||||    
T  7238967 cattcatccctacctcattaaatcatcgaactcaccact 7239005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 101 - 239
Target Start/End: Complemental strand, 6458554 - 6458416
Alignment:
Q  101 ctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaac 200  Q
    ||||| |||||  |||||||||||||||| ||||| || ||  | || ||||| |||||||||||||||||||| ||||||||  |||||||||||  ||    
T  6458554 ctcccagacccttcaaacttcttctctccgaatcttctctcatcgccactcccaacaaactctttcttccaaaattttgttctacaaaatggtgacacac 6458455  T
Q  201 ctgaatacattcatccatatctcatcaaatcttcaaact 239  Q
    |||| |||||||| || || ||||||||||| |||||||    
T  6458454 ctgagtacattcacccttacctcatcaaatcctcaaact 6458416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 94; Significance: 6e-46; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 119 - 252
Target Start/End: Original strand, 9664318 - 9664451
Alignment:
Q  119 ttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccat 218  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| || |    
T  9664318 ttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaatacattcaccctt 9664417  T
Q  219 atctcatcaaatcttcaaactcatcactttctct 252  Q
    ||||| ||||||| || |||||||||||||||||    
T  9664418 atctcgtcaaatcgtcgaactcatcactttctct 9664451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 84; E-Value: 5e-40
Query Start/End: Original strand, 68 - 239
Target Start/End: Original strand, 3752795 - 3752966
Alignment:
Q  68 cctttcctattcccacagactcattccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttct 167  Q
    ||||||||||| || || |||||||| || ||||||||  ||||  ||||||||||||| | ||| || ||||||||||||||||| |||||||||||||    
T  3752795 cctttcctatttcctcaaactcattcaacagtcctcccaaacccttcaaacttcttctcacaaaacctactatccacacccctccctacaaactctttct 3752894  T
Q  168 tccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaact 239  Q
    ||||||||||||||||| | |||||||||  ||||||||||||||| || || ||||||||||| |||||||    
T  3752895 tccaaaactttgttctccacaatggtgacacacctgaatacattcacccttacctcatcaaatcctcaaact 3752966  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 68 - 240
Target Start/End: Complemental strand, 4047443 - 4047271
Alignment:
Q  68 cctttcctattcccacagactcattccacggtcctccctgaccccacaaacttcttctctccaaatctgctatccacacccctccccacaaactctttct 167  Q
    ||||||||||| || || |||||||| || ||||| ||  ||||  |||| |||||||| | |||  | ||||||||||| ||||| |||||||| ||||    
T  4047443 cctttcctatttcctcaaactcattcaactgtccttccaaacccttcaaatttcttctcacaaaacttactatccacacctctccctacaaactcattct 4047344  T
Q  168 tccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccatatctcatcaaatcttcaaactc 240  Q
    ||||||| ||||||||  |||||||||| |||| |||||||||||| || || ||  ||||||| ||||||||    
T  4047343 tccaaaattttgttctacaaaatggtgatcaacatgaatacattcacccttaccttgtcaaatcctcaaactc 4047271  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 94; Significance: 6e-46; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 94; E-Value: 6e-46
Query Start/End: Original strand, 119 - 252
Target Start/End: Original strand, 13535342 - 13535475
Alignment:
Q  119 ttcttctctccaaatctgctatccacacccctccccacaaactctttcttccaaaactttgttctcaaaaatggtgaccaacctgaatacattcatccat 218  Q
    ||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||  |||||||||||| || |    
T  13535342 ttcttctctccaaatcttctatctacacccctccctacaaactctttcttccaaaactttgttctcaaaaatggtgaccaatatgaatacattcaccctt 13535441  T
Q  219 atctcatcaaatcttcaaactcatcactttctct 252  Q
    ||||| ||||||| || |||||||||||||||||    
T  13535442 atctcgtcaaatcgtcgaactcatcactttctct 13535475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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