View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8782_low_12 (Length: 263)
Name: NF8782_low_12
Description: NF8782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8782_low_12 |
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Alignment Details
Target: chr6 (Bit Score: 180; Significance: 3e-97; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 180; E-Value: 3e-97
Query Start/End: Original strand, 18 - 252
Target Start/End: Original strand, 3046187 - 3046411
Alignment:
| Q |
18 |
ccaaccccattacatagaagacattacatcaatcatacctagtggaaagacacacgtctttctccgcttccataaattaactacaatcattgagcttcca |
117 |
Q |
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| T |
3046187 |
ccaaccccattacatagaagacattacatcaatcataactagtggaaagacgcacgtctttcttcgcttccataaattaactacaatcattgagcttcca |
3046286 |
T |
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| Q |
118 |
aatatggaagacttccttcatccaaccaaatcgagattcattcttcccatcatatattccaagaacatctaactaacggaatgatatcctttctcaaaat |
217 |
Q |
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|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||| |
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| T |
3046287 |
aatatggaagtcttccttcatccaaccaaatcgagattcattcttcccatcatatattcc----------aactaacggaatcatatcctttctcaaaat |
3046376 |
T |
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| Q |
218 |
ccaccttcactaacaaacacccttttctacttctt |
252 |
Q |
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| T |
3046377 |
ccaccttcactaacaaacacccttttctacttctt |
3046411 |
T |
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