View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8782_low_15 (Length: 237)
Name: NF8782_low_15
Description: NF8782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8782_low_15 |
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Alignment Details
Target: chr4 (Bit Score: 210; Significance: 1e-115; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 1 - 222
Target Start/End: Complemental strand, 19421447 - 19421226
Alignment:
| Q |
1 |
aatgaagtttgtgtgcattgacatacctagcatttatttctggaactccaggggctgcagctacacttccatatattaaaccataagaatgctccatttt |
100 |
Q |
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| T |
19421447 |
aatgaagtttgcgtgcattgacatacctagcatttgtttctggaactccaggggctgcagctacacttccatatattaaaccataagaatgctccatttt |
19421348 |
T |
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| Q |
101 |
tactggattcaaagaataaccctgaaggaacataaacatgtcttaatttactagctaatatttataggtataagggttttatataaaggtccacgatcca |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
19421347 |
tactggattcaaagaataaccctgaaggaacataaacatgtcttaatttactagctaatatttataggtataagggttttatataaaggtccgcgatcca |
19421248 |
T |
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| Q |
201 |
ggctgcaacagaaactgttttt |
222 |
Q |
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|||||||||||||||||||||| |
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| T |
19421247 |
ggctgcaacagaaactgttttt |
19421226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 86; E-Value: 3e-41
Query Start/End: Original strand, 2 - 175
Target Start/End: Complemental strand, 19428432 - 19428259
Alignment:
| Q |
2 |
atgaagtttgtgtgcattgacatacctagcatttatttctggaactccaggggctgcagctacacttccatatattaaaccataagaatgctccattttt |
101 |
Q |
| |
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||||||||| |||||||| |||||||||||||| || |||||||||||| || |||||| ||||||||||||| | ||||| | |||||||||||||| |
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| T |
19428432 |
atgaagtttatgtgcatttccatacctagcatttgttgctggaactccagacgccgcagctgcacttccatatatcagaccatgaaaatgctccattttt |
19428333 |
T |
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| Q |
102 |
actggattcaaagaataaccctgaaggaacataaacatgtcttaatttactagctaatatttataggtataagg |
175 |
Q |
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| T |
19428332 |
attggattcaaagaataaccctgaaggcacataaaccgatcttaatttattacctaatatttatacgtacaagg |
19428259 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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