View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8782_low_3 (Length: 434)
Name: NF8782_low_3
Description: NF8782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8782_low_3 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 414; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 418
Target Start/End: Complemental strand, 14612589 - 14612172
Alignment:
| Q |
1 |
atgaagtcttatcccattaaagggggtcgtgttaaagacaaacctatattacgatgaaataaccaatgcatcaacgcataagcaagcattatcatttcat |
100 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14612589 |
atgaagtcgtatcccattaaagggggtcgtgttaaagacaaacctatattacgatgaaataaccaatgcatcaacgcataagcaagcattatcatttcat |
14612490 |
T |
|
| Q |
101 |
ggaaattggaaatttccgctagcacttttttcagtaccaccctcggccgggctaatggcaatccaaagcaaagaaagtgtaattgcaatgagacctgacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14612489 |
ggaaattggaaatttccgctagcacttttttcagtaccaccctcggccgggctaatggcaatccaaagcaaagaaagtgtaattgcaatgagacctgacc |
14612390 |
T |
|
| Q |
201 |
acacatatacaatggtgggtgtcttccctctccttcccatcaatccttttgcaaatggatacaaatgtgcaagaacccaaaaactaaagaatgctcctcc |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14612389 |
acacatatacaatggtgggtgtcttccctctccttcccatcaatccttttgcaaatggatacaaatgtgcaagaacccaaaaactaaagaatgctcctcc |
14612290 |
T |
|
| Q |
301 |
tataaacttactccattgtggaactgcactataaattgttctagaaaacgcaaccccaatggcaatcacatttaccatagcaatgacaattggaggaatc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
14612289 |
tataaacttactccattgtggaactgcactataaattgttctagaaaacgcaaccccaatggcaatcacatttaccatagcaatgacaattggaggaatc |
14612190 |
T |
|
| Q |
401 |
attagagaggtccatttg |
418 |
Q |
| |
|
|||||||||||||||||| |
|
|
| T |
14612189 |
attagagaggtccatttg |
14612172 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 149 - 418
Target Start/End: Original strand, 14596129 - 14596398
Alignment:
| Q |
149 |
gggctaatggcaatccaaagcaaagaaagtgtaattgcaatgagacctgaccacacatatacaatggtgggtgtcttccctctccttcccatcaatcctt |
248 |
Q |
| |
|
|||||||||| || ||||||||||||||| | |||||||||||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
14596129 |
gggctaatggaaacccaaagcaaagaaaggatgattgcaatgagacctgaccacacaaatacaatggtgggagtcttccctctccttcccatcaatcctt |
14596228 |
T |
|
| Q |
249 |
ttgcaaatggatacaaatgtgcaagaacccaaaaactaaagaatgctcctcctataaacttactccattgtggaactgcactataaattgttctagaaaa |
348 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || |||||||| ||||||||||| |
|
|
| T |
14596229 |
ttgcaaatggatacaaatgtgcaagaacccaaaagctaaagaatgctcctcctataaacttactccattgtggattcgcgctataaatggttctagaaaa |
14596328 |
T |
|
| Q |
349 |
cgcaaccccaatggcaatcacatttaccatagcaatgacaattggaggaatcattagagaggtccatttg |
418 |
Q |
| |
|
|||||| |||||||||||||||||||||| || || |||||||| ||||||||||| ||| |||||||| |
|
|
| T |
14596329 |
tgcaaccacaatggcaatcacatttaccattgcgataacaattggtggaatcattagggagctccatttg |
14596398 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 261
Target Start/End: Complemental strand, 47920484 - 47920405
Alignment:
| Q |
182 |
attgcaatgagacctgaccacacatatacaatggtgggtgtcttccctctccttcccatcaatccttttgcaaatggata |
261 |
Q |
| |
|
||||| || ||||| ||||| ||| | ||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
47920484 |
attgctattagacccgaccatacaaaaacaatggtgggtgtcctccctcttcttcccatcaaaccttttgcaaaaggata |
47920405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 182 - 261
Target Start/End: Original strand, 29916634 - 29916713
Alignment:
| Q |
182 |
attgcaatgagacctgaccacacatatacaatggtgggtgtcttccctctccttcccatcaatccttttgcaaatggata |
261 |
Q |
| |
|
||||| || ||||| ||||| ||| | ||||||||||||||| ||||||| ||||||||||| ||||||||||| ||||| |
|
|
| T |
29916634 |
attgctatcagacccgaccatacaaaaacaatggtgggtgtcctccctcttcttcccatcaaaccttttgcaaaaggata |
29916713 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University