View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8782_low_4 (Length: 433)
Name: NF8782_low_4
Description: NF8782
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8782_low_4 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 298; Significance: 1e-167; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 298; E-Value: 1e-167
Query Start/End: Original strand, 18 - 416
Target Start/End: Complemental strand, 8453972 - 8453570
Alignment:
| Q |
18 |
acatcactttcattttgtccattacttaggttcggatttctaaccatttggttatttgatnnnnnnnnnnnnnnn-----ttataattatgcatagattt |
112 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
8453972 |
acatcacattcattttgtccattacttaggttcggatttcgaaccatttggttatttgatcaaaataaaaaaaaaaaaatttataattatgcatagattt |
8453873 |
T |
|
| Q |
113 |
attgtnnnnnnngaaaagaattatgcatagatttgcacaggaagcgacataaacaatggacgcccacaggttgtttttctgtcctttgaaaggtgacaaa |
212 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8453872 |
attgtaaaaaaagaaaagaattatgcatagatttgcacaggaagcgacataaacaatggacgcccacaggttgtttttctgtcctttgaaaggtgacaaa |
8453773 |
T |
|
| Q |
213 |
ggattggttgttgatttgattcaataaaaggatttaaaacttggttagttgatcattagcacttatatttattataatggtgatagtgtgataatcaaga |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8453772 |
ggattggttgttgatttgattcaataaaaggatttaaaacttggttagttgatcattagcacttatatttattataatggtgacagtgtgataatcaaga |
8453673 |
T |
|
| Q |
313 |
aatgtaaaggaaacatacattgtctttgtctagtttatttatttttgaataatggtctttgtctagttaaaatccacgtagactaggggtgcacactgcg |
412 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8453672 |
aatgtaaaggaaacatacattgtctttgtctagtttatttatttttgaataat-gtctttgtctagttaaaatccacgtagactaggggtgcacactgcg |
8453574 |
T |
|
| Q |
413 |
ctac |
416 |
Q |
| |
|
|||| |
|
|
| T |
8453573 |
ctac |
8453570 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University