View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8783_high_3 (Length: 404)
Name: NF8783_high_3
Description: NF8783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8783_high_3 |
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Alignment Details
Target: chr5 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 10 - 398
Target Start/End: Complemental strand, 2636186 - 2635798
Alignment:
| Q |
10 |
ggacatcaaacactacatttaaacaatggaaatgattaaattaatacgtatcagacaccatatacatttttgaatccgaagtgatgatgctcgaaaaaac |
109 |
Q |
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| T |
2636186 |
ggacatcaaacactacatttaaaaaatggaaatgattaaattaatacgtatcagacaccatatacattttttaatctgaagtgatgatgctcgaaaaaac |
2636087 |
T |
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| Q |
110 |
acggtgttaggttattctaacctgcaaatctcctgcactgcacgcccttcttatttgtccatggaagaaactgtttcccggggagctcaattcatgacat |
209 |
Q |
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| T |
2636086 |
acggtgttaggttattctaacctgcaaatctcctgcactgcacgcccttcttatttgtccattgaagaaactgttttccggggagctcaattcatgacat |
2635987 |
T |
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| Q |
210 |
tgaaaaattggggaatccatgtgtgagttatggtaagcttcagaaggaaaatcaagtttctcatgaaaattgttacagttgtagctcctctgcattaagt |
309 |
Q |
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| T |
2635986 |
tgaaaaattggggaatccatgtgtgtgttatggtaagcttcagaaggaaaatcaagtttctcatgaaaattgttacagttgtagctcctctgcattaact |
2635887 |
T |
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| Q |
310 |
tttgatagtaggtgtaatctacacccatttggcattccttggttttcaaactagacccatccaaagcagagaaatttccaagctgatca |
398 |
Q |
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| T |
2635886 |
tttgatagtaggtgtaatctacacccatttggcattccttggttttcaaactagacccatccaaagcagagaaatttccaagctgatca |
2635798 |
T |
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