View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8783_low_10 (Length: 313)
Name: NF8783_low_10
Description: NF8783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8783_low_10 |
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Alignment Details
Target: chr2 (Bit Score: 250; Significance: 1e-139; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 250; E-Value: 1e-139
Query Start/End: Original strand, 20 - 297
Target Start/End: Complemental strand, 41822655 - 41822377
Alignment:
| Q |
20 |
tcagagatggcagagaaagagagtttgttttctataggtgattggatgagaataccaatttgcactttcttcaaggatgctaggtataccattttttgtc |
119 |
Q |
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| T |
41822655 |
tcagagatggcagagaaagagagtttgttttctataggtgattggatgagaataccaatttgcactttcttcaaggatgctaggtataccattttttgtc |
41822556 |
T |
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| Q |
120 |
ctatttcctctacatattttcaattattgtgtttaatgattttgaaatttaagttctaattcctctagttagcaattgtatttttaggtgatgcagagtg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41822555 |
ctatttcctctacatattttcaattattgtgtttaatgattttgaaatttaagttctaattcctctagttagcaattgtatttttaggtgatgcagagtg |
41822456 |
T |
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| Q |
220 |
atgagctgttatgtatgatgaactttacctcgtatttttagttca-nnnnnnngttctttcagtagttgtttgtgatgt |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
41822455 |
atgagctgttatgtatgatgaactttacctcgtatttttagttcattttttttgttctttcagtagttgtttgtgatgt |
41822377 |
T |
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