View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8783_low_2 (Length: 474)
Name: NF8783_low_2
Description: NF8783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8783_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 276; Significance: 1e-154; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 276; E-Value: 1e-154
Query Start/End: Original strand, 23 - 321
Target Start/End: Original strand, 53464925 - 53465220
Alignment:
| Q |
23 |
aggatctccactgatcttgcagatatatgtccctcccttatttttctactatttctgtcttgcaaggaacaatgaacccttgagtttagttgagttgagt |
122 |
Q |
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| T |
53464925 |
aggatctccactgatcttgcagatatatgtccctcccttatttttctactatttctgtcttgcaaggaacaatgaacccttgagtttagttgagttgagt |
53465024 |
T |
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| Q |
123 |
tgaattaaaactcttttatgtttcacattcacacactattcccctccatatatagagtacactttgagtttcaacttttaaaccattataccactaaaac |
222 |
Q |
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| T |
53465025 |
tgaattaaaactcttt-atgtttcacattcacacactattcccctccatatatag--tacactttgagtttcaacttttaaaccattataccactaaaac |
53465121 |
T |
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| Q |
223 |
ttctttcctctctctttctctcttaatcaatagctataatcatgaataattttcatcctaatacttttcttcacttaaaccaaccagataatgagaata |
321 |
Q |
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| T |
53465122 |
ttctttcatctctctttctctcttaatcaatagctataatcatgaataattttcatcctaatacttttcttcacttaaaccaaccagataatgagaata |
53465220 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 66; Significance: 5e-29; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 384 - 453
Target Start/End: Complemental strand, 22682351 - 22682282
Alignment:
| Q |
384 |
ggaatgaagagaggaaataatcatccacctaggtgtcaagttgaaggttgtaaagtagatctgagtggtg |
453 |
Q |
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| T |
22682351 |
ggaatgaagaggggaaataatcatccacctaggtgtcaagttgaaggttgtaaagtagatctgagtggtg |
22682282 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 32; Significance: 0.00000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 408 - 447
Target Start/End: Complemental strand, 36896903 - 36896864
Alignment:
| Q |
408 |
ccacctaggtgtcaagttgaaggttgtaaagtagatctga |
447 |
Q |
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| T |
36896903 |
ccacctaggtgtcaagttgaaggatgtaaactagatctga |
36896864 |
T |
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