View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8783_low_4 (Length: 425)
Name: NF8783_low_4
Description: NF8783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8783_low_4 |
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Alignment Details
Target: chr7 (Bit Score: 326; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 326; E-Value: 0
Query Start/End: Original strand, 6 - 408
Target Start/End: Original strand, 30107939 - 30108341
Alignment:
| Q |
6 |
atttttaaaagaaattaaagggttaaaacaacacatttaagcatttattgttctaatannnnnnnctttaatcttaaatttaaattgtttaattccgtta |
105 |
Q |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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| T |
30107939 |
atttttaaaagaaattaaagggataaaacaacacatttaagcatttattgttctaatatttttttctttaatcttaaatttaaattgtttaattccgtta |
30108038 |
T |
|
| Q |
106 |
gatcttgcattgggggaccgcatgctaaatgttgaacaagaagacgatgatgatacacatgatgaagattgcacatgaatgtcagagcgtgtatgaccac |
205 |
Q |
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||||||||||| ||||||||||||||||||||||||||||||||||||||||||| | || ||||||||||||||||||| ||| ||||||||||||||| |
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| T |
30108039 |
gatcttgcattaggggaccgcatgctaaatgttgaacaagaagacgatgatgataaatattatgaagattgcacatgaatttcaaagcgtgtatgaccac |
30108138 |
T |
|
| Q |
206 |
attaaactttagattcaatttgtttccaccgatattagataacctactttggaatccttgaggtgatttgcacattcatacaaatcttatcgatcaaaga |
305 |
Q |
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|||||||||||| |||||||| |||| |||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30108139 |
attaaactttaggttcaatttatttctaccggtattagagaacctactttggaatccttgaggtgatttgcacattcatacaaatcttatcgatcaaaga |
30108238 |
T |
|
| Q |
306 |
tagtttatagaataaagttttctcaactaatcttgtgtgttacagaaaagaagagatgatttagtattattttcagcataatgttgactcacaagaatgt |
405 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
30108239 |
tagtttatagaataaagttttctcaactaatcttgtgtgttacagaaaagaagaaatgatttagtattattttcggcataatgttgactcacaagaatgt |
30108338 |
T |
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| Q |
406 |
gat |
408 |
Q |
| |
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||| |
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| T |
30108339 |
gat |
30108341 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 47; Significance: 1e-17; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 250 - 408
Target Start/End: Original strand, 40574310 - 40574468
Alignment:
| Q |
250 |
tactttggaatccttgaggtgatttgcacattcatacaaatcttatcgatcaaagatagtttatagaataaagttttctcaactaatcttgtgtgttaca |
349 |
Q |
| |
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|||| ||||||| |||| |||| ||||||||||| || || | |||| ||||| ||||||||| ||||||||||| | |||| | ||| ||| || | |
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| T |
40574310 |
tactatggaatctttgacgtgacttgcacattcacacgaagcgtatcaatcaatgatagtttacagaataaagttctgtcaatttctctcgtgcactaga |
40574409 |
T |
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| Q |
350 |
gaaaagaagagatgatttagtattattttcagcataatgttgactcacaagaatgtgat |
408 |
Q |
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|||||||| |||||||| |||||||||| ||| ||| |||||||||||||||||||| |
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| T |
40574410 |
gaaaagaaagaatgatttaatattattttcggcagaattttgactcacaagaatgtgat |
40574468 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 364 - 408
Target Start/End: Original strand, 31362353 - 31362397
Alignment:
| Q |
364 |
atttagtattattttcagcataatgttgactcacaagaatgtgat |
408 |
Q |
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|||||||||||||||| || ||| |||||||||||||||||||| |
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|
| T |
31362353 |
atttagtattattttcgacagaattttgactcacaagaatgtgat |
31362397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 37; Significance: 0.00000000001; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 254 - 318
Target Start/End: Complemental strand, 44729193 - 44729129
Alignment:
| Q |
254 |
ttggaatccttgaggtgatttgcacattcatacaaatcttatcgatcaaagatagtttatagaat |
318 |
Q |
| |
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||||||||||||| |||| |||||||||||||| || | |||||||||| ||||||||| ||||| |
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| T |
44729193 |
ttggaatccttgacgtgacttgcacattcataccaagcgtatcgatcaatgatagtttacagaat |
44729129 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 361 - 408
Target Start/End: Original strand, 14218993 - 14219040
Alignment:
| Q |
361 |
atgatttagtattattttcagcataatgttgactcacaagaatgtgat |
408 |
Q |
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|||||||||||||||||| |||||||| ||||||||||| |||||||| |
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| T |
14218993 |
atgatttagtattatttttagcataattttgactcacaataatgtgat |
14219040 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 372 - 408
Target Start/End: Original strand, 34681218 - 34681254
Alignment:
| Q |
372 |
ttattttcagcataatgttgactcacaagaatgtgat |
408 |
Q |
| |
|
|||||||| ||||||| |||||||||||||||||||| |
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|
| T |
34681218 |
ttattttcggcataattttgactcacaagaatgtgat |
34681254 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 255 - 331
Target Start/End: Complemental strand, 49061488 - 49061413
Alignment:
| Q |
255 |
tggaatccttgaggtgatttgcacattcatacaaatcttatcgatcaaagatagtttatagaataaagttttctcaa |
331 |
Q |
| |
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|||||||||||| |||||||||||||||| || || | |||||| ||| | ||||||| ||||||||||||| |||| |
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| T |
49061488 |
tggaatccttgacgtgatttgcacattcacaccaaacatatcga-caatggtagtttacagaataaagttttgtcaa |
49061413 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 349 - 408
Target Start/End: Complemental strand, 10917541 - 10917482
Alignment:
| Q |
349 |
agaaaagaagagatgatttagtattattttcagcataatgttgactcacaagaatgtgat |
408 |
Q |
| |
|
||||||||||| ||||||| ||||||||||| ||| || |||||| ||||||||||||| |
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| T |
10917541 |
agaaaagaagaaatgattttgtattattttcggcagaactttgacttacaagaatgtgat |
10917482 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 364 - 405
Target Start/End: Complemental strand, 26900506 - 26900465
Alignment:
| Q |
364 |
atttagtattattttcagcataatgttgactcacaagaatgt |
405 |
Q |
| |
|
||||||||||||||||| || ||| ||||||||||||||||| |
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| T |
26900506 |
atttagtattattttcaccaaaattttgactcacaagaatgt |
26900465 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 410
Target Start/End: Complemental strand, 29006494 - 29006445
Alignment:
| Q |
361 |
atgatttagtattattttcagcataatgttgactcacaagaatgtgatgt |
410 |
Q |
| |
|
|||||||||||| ||||| |||| ||| | |||||||||||||||||||| |
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| T |
29006494 |
atgatttagtataatttttagcagaatttagactcacaagaatgtgatgt |
29006445 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 361 - 410
Target Start/End: Original strand, 27538200 - 27538249
Alignment:
| Q |
361 |
atgatttagtattattttcagcataatgttgactcacaagaatgtgatgt |
410 |
Q |
| |
|
||||||||||||||||||| ||| ||| || || |||||||||||||||| |
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|
| T |
27538200 |
atgatttagtattattttcggcagaattttcacccacaagaatgtgatgt |
27538249 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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