View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8783_low_6 (Length: 339)
Name: NF8783_low_6
Description: NF8783
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8783_low_6 |
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Alignment Details
Target: chr7 (Bit Score: 283; Significance: 1e-158; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 20 - 324
Target Start/End: Original strand, 38740928 - 38741229
Alignment:
| Q |
20 |
gtactattgctaatttcatttgattctttgatttatttgaggctccaatgcaactacattcttttataacatatacggtgtatttgattctttgtagtat |
119 |
Q |
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| T |
38740928 |
gtactattgctaatttcatttgattctttgatttatttgaggctccaatgcaactacattcttttataacatatatggtgtatttgattctttgtagtat |
38741027 |
T |
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| Q |
120 |
agtgaaatataatcctttacattcttgcttttgtttccactttggtacataactaacttcctgtgaggtttaaacacatttttaacatattcattcacta |
219 |
Q |
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| T |
38741028 |
agtgaaatataatcctttacattcttgcttttgtttccactttggtacataactaacttcctgtgaggtttaaacacatttttaacatattcattcacta |
38741127 |
T |
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| Q |
220 |
tgaattagagaccaaaattataattcatgaaattattttttatcaggaacatatatattaatgtataccatttgtagcctccagcttcaaattttcccga |
319 |
Q |
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| T |
38741128 |
tgaattagagaccaaaattataattcatgaaattattttttatcaggaacatata---ttatgtataccatttgtagcctccagcttcaaattttcccga |
38741224 |
T |
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| Q |
320 |
ttcat |
324 |
Q |
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||||| |
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| T |
38741225 |
ttcat |
38741229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 115 - 324
Target Start/End: Complemental strand, 51006633 - 51006427
Alignment:
| Q |
115 |
agtatagtgaaatataatcctttacattcttgcttttgtttccactttggtacataactaacttcctgtgaggtttaaacacatttttaacatattcatt |
214 |
Q |
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||||||||||||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||| |||| |||||||||||||||||||| |
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| T |
51006633 |
agtatagtgaaatatgatcctttacattcttgcttttgtttccacttgggtacaaaactaacttcctgtgaggtataaatacatttttaacatattcatt |
51006534 |
T |
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| Q |
215 |
cactatgaattagagaccaaaattataattcatgaaattattttttatcaggaacatatata----ttaatgtataccatttgtagcctccagcttcaaa |
310 |
Q |
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| T |
51006533 |
c----tgaa--atggaccaaaattatcattcatgaaatta-tttttatcaaaaacatatataatgtatattgtataccatttgtggcctccagcttcaaa |
51006441 |
T |
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| Q |
311 |
ttttcccgattcat |
324 |
Q |
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| T |
51006440 |
cctccccgattcat |
51006427 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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