View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8784_high_10 (Length: 320)
Name: NF8784_high_10
Description: NF8784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8784_high_10 |
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| [»] chr3 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 1 - 320
Target Start/End: Original strand, 45128911 - 45129230
Alignment:
| Q |
1 |
gtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtgaaactgagtctctattgtactcacttacataacgagagtaa |
100 |
Q |
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| T |
45128911 |
gtccacaaatctactagtttctttactcaccaatcccataacctttgaacaaagaggtgaaactgagtctctattgtactcacttacataacgagagtaa |
45129010 |
T |
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| Q |
101 |
ttacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaa |
200 |
Q |
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| T |
45129011 |
ttacacactctagtgaacatgttgtaagttgcatctgatattagtccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaa |
45129110 |
T |
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| Q |
201 |
ctggatttcccaactgcaattcaactttggtatcaacagctagcaaattgtatggaatnnnnnnnntcatcaatgtagcattacttaccgctatgccttt |
300 |
Q |
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| T |
45129111 |
ctggatttcccaactgcaattcaactttggtatcaacagctagcaaattgtatggaataaaaaaaatcatcaatgtagccttacttacggctatgccttt |
45129210 |
T |
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| Q |
301 |
aaggttgaatatcttgtttc |
320 |
Q |
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| T |
45129211 |
aaggttgaatatcttgtttc |
45129230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 72; Significance: 1e-32; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 41 - 220
Target Start/End: Original strand, 40280806 - 40280985
Alignment:
| Q |
41 |
acctttgaacaaagaggtgaaactgagtctctattgtactcacttacataacgagagtaattacacactctagtgaacatgttgtaagttgcatctgata |
140 |
Q |
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| T |
40280806 |
acctttgaacaaagcagggaaatggagtttctatagtactcacttacatactgcgaataattgcagcctgcggtgaacattttgtaagttgaatctgata |
40280905 |
T |
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| Q |
141 |
ttagtccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatttcccaactgcaat |
220 |
Q |
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| T |
40280906 |
tcaatccatgagaccagaagaactcagcccttgaattgaagtcagtggcatattctagaagtggatttcccaactgcaat |
40280985 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 145 - 207
Target Start/End: Original strand, 6632284 - 6632346
Alignment:
| Q |
145 |
tccatgtgaccaaaagaattcagcccttgaattgaaatcagttgcatattctagaactggatt |
207 |
Q |
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| T |
6632284 |
tccatgagaccaaaagaactcagctcttgaattaaaatctgttgcaaattctaaaactggatt |
6632346 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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