View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8784_high_3 (Length: 380)
Name: NF8784_high_3
Description: NF8784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8784_high_3 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 348; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 348; E-Value: 0
Query Start/End: Original strand, 1 - 364
Target Start/End: Original strand, 36228036 - 36228399
Alignment:
| Q |
1 |
ccattgaagcatatgaaaataaaccatgaatctaactatcgatgaagtccacgtgaaatgagtaatgtaactaatacttcattaatggagacaattatta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36228036 |
ccattgaagcatatgaaaataaaccatgaatctaactatcgatgaagtccacgtgaaatgagtaatgtaactaatacttcattaatggagacaattatta |
36228135 |
T |
|
| Q |
101 |
gacaaacctttctaagataaattttgattgttcagccaagcactggagatgaacgttataacgaatccccaaattttgggacctcgaatttacaaaataa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36228136 |
gacaaacctttctaagataaattttgattgttcagccaagcactggagatgaacgttataacgaatccccaaattttgggacctcgaatttacaaaataa |
36228235 |
T |
|
| Q |
201 |
catcggtcaataaactgttatcttcgtcttttaggggtgttcggtgttgaggtgtcacactaaatgacatgttcaccttggtgtggagcattttgacaac |
300 |
Q |
| |
|
|||||||||||||| |||||||| |||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36228236 |
catcggtcaataaaatgttatctccgtcgtttaggggtgttcggtgttaaggtgtcacactaaatgacatgttcaccttggtgtggagcattttgacaac |
36228335 |
T |
|
| Q |
301 |
ttaattataaatcatttaagtctttcaattataatgcataaatcgtcaaaatactccatataac |
364 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36228336 |
ttaattataaatcatttaagtctttcaattataatgcataaatcgtcaaaatactccatataac |
36228399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University