View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8784_high_5 (Length: 370)
Name: NF8784_high_5
Description: NF8784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8784_high_5 |
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Alignment Details
Target: chr7 (Bit Score: 148; Significance: 5e-78; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 141 - 329
Target Start/End: Complemental strand, 43317134 - 43316934
Alignment:
| Q |
141 |
gtactactgtataaagatgcattttctcatgctagtacaagtgatgcttgacttgactaccaagttttgatt------------cataatcaatcaacct |
228 |
Q |
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| T |
43317134 |
gtactactgtataaagatgcattttctcatgctagtacaagtgatgcttgacttgactaccaagttttgattaatatttttattcataatcaatcaacct |
43317035 |
T |
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| Q |
229 |
tcacagtagccagtagccaccgtttgagaattaaataattaatctcaactaattattttttaaaacaatagggaggatcataaccaaagcaataattagg |
328 |
Q |
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| T |
43317034 |
tcacagtagccagtagccaccatttgagaattaattaattaatctcaactaattattttttaaaacaatagggaggattataaccaaagcaataattagg |
43316935 |
T |
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| Q |
329 |
a |
329 |
Q |
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| T |
43316934 |
a |
43316934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 17 - 76
Target Start/End: Complemental strand, 43317253 - 43317194
Alignment:
| Q |
17 |
taattctagaaacgaagaatctaaaatatttgaacaaattttcttttgtggataagtctt |
76 |
Q |
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||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||| |
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| T |
43317253 |
taattctagaaacgaagaatctaaaatctttgaacaaattttcttttgttgataagtctt |
43317194 |
T |
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