View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF8784_high_6 (Length: 352)

Name: NF8784_high_6
Description: NF8784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF8784_high_6
NF8784_high_6
[»] chr1 (7 HSPs)
chr1 (18-315)||(46621341-46621638)
chr1 (18-317)||(46627060-46627371)
chr1 (72-295)||(15800305-15800527)
chr1 (172-272)||(15829911-15830011)
chr1 (172-272)||(15831639-15831739)
chr1 (172-272)||(15833366-15833466)
chr1 (161-272)||(15828285-15828396)
[»] chr7 (1 HSPs)
chr7 (18-300)||(37147500-37147781)
[»] chr5 (8 HSPs)
chr5 (91-272)||(22654244-22654425)
chr5 (91-229)||(37328116-37328254)
chr5 (36-151)||(39174088-39174203)
chr5 (82-226)||(38848834-38848978)
chr5 (91-293)||(38807461-38807663)
chr5 (82-226)||(38865820-38865964)
chr5 (173-226)||(39310566-39310619)
chr5 (173-226)||(38750215-38750268)
[»] scaffold0754 (1 HSPs)
scaffold0754 (172-272)||(3912-4012)
[»] scaffold0563 (5 HSPs)
scaffold0563 (172-272)||(10444-10544)
scaffold0563 (172-272)||(762-862)
scaffold0563 (172-272)||(3255-3355)
scaffold0563 (172-272)||(5083-5183)
scaffold0563 (172-272)||(7579-7679)
[»] scaffold0496 (1 HSPs)
scaffold0496 (82-134)||(12299-12351)
[»] scaffold0492 (1 HSPs)
scaffold0492 (172-272)||(804-904)
[»] chr3 (1 HSPs)
chr3 (172-282)||(43396134-43396244)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 18 - 315
Target Start/End: Complemental strand, 46621638 - 46621341
Alignment:
Q  18 agtgggggcatgaaggtgatggaacatggcttaggattagctaggttggattggtggctgcaccatgccggcctgcccgctccaagttgagagttggcca 117  Q
    ||||||||||||||||||||||||||||||||| |||| || ||||||| |||||||||||||||||| ||||||||| |||||||||||||||||||||    
T  46621638 agtgggggcatgaaggtgatggaacatggcttaagatttgccaggttgggttggtggctgcaccatgctggcctgcccactccaagttgagagttggcca 46621539  T
Q  118 atgggacctaggcgaaggcttgagtctccttggtcttagactggagggcactgtgtgaggctggtttcacagagcagcaaacacctccggctcttgacag 217  Q
    ||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  46621538 atgtgacctaggcgaaggcttgagtctccttggtcctagactggagggcactgtgtgaggctggtttcacagagcagcaaacacctccgtctcttgacag 46621439  T
Q  218 tggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagccacttgaaccacaacttttttgtttcaagtatcacttgttccat 315  Q
    |||||||||||||| ||||||||||||||| |||||||||||||||||||||||||| |||||||| ||||||||||||||||| |||||| ||||||    
T  46621438 tggagggataactggccgctgcacttctagtccaatatgcctggtgagcctagccacctgaaccaccacttttttgtttcaagtgtcacttcttccat 46621341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 18 - 317
Target Start/End: Complemental strand, 46627371 - 46627060
Alignment:
Q  18 agtgggggcatgaaggtgatggaacatggcttaggattagctaggttggattggtggctgcaccatgccggcctgcccgctccaagttgagagttgg-cc 116  Q
    |||||||||||||||||||||||||||||||||||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||    
T  46627371 agtgggggcatgaaggtgatggaacatggcttaggatttgccaggttgggttggtggctgcaccatgccggcctgcccgctccaagttgagagttgggcc 46627272  T
Q  117 aatgggacctaggcgaaggcttgagtctccttggtcttagac------tggagggcactgtgtgaggctggtttcacagagcagcaaacacctccggctc 210  Q
    |||||||||||||||||||||||||||||||||||| |||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  46627271 aatgggacctaggcgaaggcttgagtctccttggtcctagacctagactggagggcactgtgtgaggctggtttcacagagcagcaaacacctccggctc 46627172  T
Q  211 ttgacagtg----gagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagccacttgaaccacaactt-ttttgtttcaagtatca 305  Q
    |||||||||    |||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||    
T  46627171 ttgacagtgagtggagggataactggccgctgcacttctagcccaatatgcctggtgagcctagccacttgaaccacaactttttttgtttcaagtatca 46627072  T
Q  306 cttgttccataa 317  Q
    ||||||||||||    
T  46627071 cttgttccataa 46627060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 72 - 295
Target Start/End: Complemental strand, 15800527 - 15800305
Alignment:
Q  72 tggctgcaccatgccggcctgcccgctccaagttgagagttggccaatgggacctaggcgaaggcttgagtctccttggtcttagactggagggcactgt 171  Q
    ||||||||  |||| |||||||||||||||||||||||||||| | | ||||| |  |||||||| |  ||||| | | || |||||  ||||| |  |     
T  15800527 tggctgcaatatgctggcctgcccgctccaagttgagagttggtccacgggacttgtgcgaaggcctatgtctcttggttcctagacgagagggaatggc 15800428  T
Q  172 gtgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagc 271  Q
    |||||||||||||||||||||||| || ||||| ||||| ||||||||||||||| || | | |||||||||  || ||| || ||| | ||||||||||    
T  15800427 gtgaggctggtttcacagagcagcgaatacctctggctcctgacagtggagggattacgggctgctgcactttcagtccattaagcccgctgagcctagc 15800328  T
Q  272 cacttgaaccacaacttttttgtt 295  Q
    | | |||||||  |||||||||||    
T  15800327 ctc-tgaaccatcacttttttgtt 15800305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 15830011 - 15829911
Alignment:
Q  172 gtgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagc 271  Q
    |||||||||||||||||||||||| || ||||| |||||   ||||||||||||  || | | |||||||||| || ||| || ||| ||||||||||||    
T  15830011 gtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttccagtccactaagcccggtgagcctagc 15829912  T
Q  272 c 272  Q
    |    
T  15829911 c 15829911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 15831739 - 15831639
Alignment:
Q  172 gtgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagc 271  Q
    |||||||||||||||||||||||| || ||||| |||||   ||||||||||||  || | | |||||||||| || ||| || ||| ||||||||||||    
T  15831739 gtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttccagtccactaagcccggtgagcctagc 15831640  T
Q  272 c 272  Q
    |    
T  15831639 c 15831639  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 15833466 - 15833366
Alignment:
Q  172 gtgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagc 271  Q
    |||||||||||||||||||||||| || ||||| |||||   ||||||||||||  || | | |||||||||| || ||| || ||| ||||||||||||    
T  15833466 gtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttccagtccactaagcccggtgagcctagc 15833367  T
Q  272 c 272  Q
    |    
T  15833366 c 15833366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 161 - 272
Target Start/End: Complemental strand, 15828396 - 15828285
Alignment:
Q  161 gagggcactgtgtgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatatgcctg 260  Q
    ||||||| |||||||||||||||||||| |||||| || |||||  |||| ||||||||||| ||| || | | |||||||||   | ||| || ||| |    
T  15828396 gagggcaatgtgtgaggctggtttcacaaagcagcgaatacctctagctcctgacagtggagtgattacaggctgctgcactttctgtccattaagcccg 15828297  T
Q  261 gtgagcctagcc 272  Q
    ||||||||||||    
T  15828296 gtgagcctagcc 15828285  T

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Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 18 - 300
Target Start/End: Original strand, 37147500 - 37147781
Alignment:
Q  18 agtgggggcatgaaggtgatggaacatggcttaggattagctaggttggattggtggctgcaccatgccggcctgcccgctccaagttgagagttggcca 117  Q
    ||||||||||  || ||| ||||||||||||||||||| || ||||||| || ||||||||||||||| ||||||||| |||||||||||||||||||||    
T  37147500 agtgggggcaacaatgtggtggaacatggcttaggatttgccaggttgggttagtggctgcaccatgctggcctgcccactccaagttgagagttggcca 37147599  T
Q  118 atgggacctaggcgaaggcttgagtctccttggtcttagactggagggcactgtgtgaggctggtttcacagagcagcaaacacctccggctcttgacag 217  Q
    ||||||||||||||||||||||||||||||||||| |||||||| |||||||| |||||||||| ||||||||||||| |  ||  ||| ||||||||||    
T  37147600 atgggacctaggcgaaggcttgagtctccttggtcctagactggcgggcactgcgtgaggctggcttcacagagcagcgagtactgccgcctcttgacag 37147699  T
Q  218 tggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagccacttgaaccacaacttttttgtttcaag 300  Q
    |||||||||||| | | |||||||| ||||||||  | |||||||||||||||| || |||||||| || |||||||||||||    
T  37147700 tggagggataacaggctgctgcactgctagcccacaaagcctggtgagcctagctacatgaaccaccac-tttttgtttcaag 37147781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 58; Significance: 2e-24; HSPs: 8)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 91 - 272
Target Start/End: Original strand, 22654244 - 22654425
Alignment:
Q  91 tgcccgctccaagttgagagttggccaatgggacctaggcgaaggcttgagtctccttggtcttagactggagggcactgtgtgaggctggtttcacaga 190  Q
    |||||||||||||||||||||||| | | ||||  | ||||||||| |  ||||| | | || |||| |  ||||||||||||||||||||||||||| |    
T  22654244 tgcccgctccaagttgagagttgggccacgggatttgggcgaaggccttggtctcttggttcctagattaaagggcactgtgtgaggctggtttcacata 22654343  T
Q  191 gcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagcc 272  Q
    ||||| || ||||| ||||||||| ||||||||||||||   | |||||  |||||| ||| || || ||||||||||||||    
T  22654344 gcagcgaatacctctggctcttgatagtggagggataacaagctgctgcggttctagtccattaagcttggtgagcctagcc 22654425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 91 - 229
Target Start/End: Complemental strand, 37328254 - 37328116
Alignment:
Q  91 tgcccgctccaagttgagagttggccaatgggacctaggcgaaggcttgagtctccttggtcttagactggagggcactgtgtgaggctggtttcacaga 190  Q
    ||||| |||||||||||||||||| | | ||||  | ||||||||| |  ||||| | | || |||||  |||||||||| |||||||||||||| ||||    
T  37328254 tgccctctccaagttgagagttgggccacgggatttgggcgaaggccttggtctcttggttcctagacgagagggcactgcgtgaggctggtttcgcaga 37328155  T
Q  191 gcagcaaacacctccggctcttgacagtggagggataac 229  Q
    ||||| || ||||| ||||||||||||||||||||||||    
T  37328154 gcagcgaagacctctggctcttgacagtggagggataac 37328116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 36 - 151
Target Start/End: Complemental strand, 39174203 - 39174088
Alignment:
Q  36 atggaacatggcttaggattagctaggttggattggtggctgcaccatgccggcctgcccgctccaagttgagagttggccaatgggacctaggcgaagg 135  Q
    |||||| ||||||||| ||| || | ||||| ||| | |||||||||| | |||||| || || |||||||||||||||||||  ||||||||||||||     
T  39174203 atggaaaatggcttagaatttgccaagttgggttgatagctgcaccatactggcctgtccacttcaagttgagagttggccaaaaggacctaggcgaaga 39174104  T
Q  136 cttgagtctccttggt 151  Q
    || |||||||||||||    
T  39174103 ctcgagtctccttggt 39174088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 38848978 - 38848834
Alignment:
Q  82 atgccggcctgcccgctccaagttgagagttggccaatgggacctaggcgaaggcttgagtctccttggtcttagactggagggcactgtgtgaggctgg 181  Q
    |||| |||||||||||||||||||||||||||| | |||||| || |||||||||     |||||| |  | |||| |||||||  | |  |||||||||    
T  38848978 atgctggcctgcccgctccaagttgagagttgggccatgggatcttggcgaaggcacagatctcctggtccctagaatggagggatccgcatgaggctgg 38848879  T
Q  182 tttcacagagcagcaaacacctccggctcttgacagtggagggat 226  Q
    |||||||||||||  ||||| |||  |||||||||||||||||||    
T  38848878 tttcacagagcagtgaacacttccttctcttgacagtggagggat 38848834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 91 - 293
Target Start/End: Original strand, 38807461 - 38807663
Alignment:
Q  91 tgcccgctccaagttgagagttggccaatgggacctaggcgaaggcttgagtctccttggtcttagactggagggcactgtgtgaggctggtttcacaga 190  Q
    ||||| |||||||||||||||||| | ||||||  | ||||||||||   ||||||| |  | ||||  |||||| || |  ||||||||||||||||||    
T  38807461 tgcccactccaagttgagagttgggccatgggatttgggcgaaggctcaggtctcctggtccctagaacggagggaaccgcatgaggctggtttcacaga 38807560  T
Q  191 gcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatat-gcctggtgagcctagccacttgaaccacaacttt 289  Q
    ||||  ||||| |||  |||| |||||||||||||| || | | |||||| |||| |  | |||| |||||||||||||||||  ||||||||  |||||    
T  38807561 gcagtgaacacttccttctctcgacagtggagggattacaggctgctgca-ttctcggtccatatagcctggtgagcctagcccattgaaccatcacttt 38807659  T
Q  290 tttg 293  Q
    ||||    
T  38807660 tttg 38807663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 82 - 226
Target Start/End: Complemental strand, 38865964 - 38865820
Alignment:
Q  82 atgccggcctgcccgctccaagttgagagttggccaatgggacctaggcgaaggcttgagtctccttggtct-tagactggagggcactgtgtgaggctg 180  Q
    |||| ||||||||| |||||||||||||||||| | ||||||  | ||||||||||    |||||| ||||  |||| |||||||  | |  ||||||||    
T  38865964 atgctggcctgcccactccaagttgagagttgggccatgggatttgggcgaaggctcagatctcct-ggtcactagaatggagggatccgcatgaggctg 38865866  T
Q  181 gtttcacagagcagcaaacacctccggctcttgacagtggagggat 226  Q
    |||| |||||||||  ||||| |||  |||||||||||||||||||    
T  38865865 gttttacagagcagtgaacacttccttctcttgacagtggagggat 38865820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 173 - 226
Target Start/End: Complemental strand, 39310619 - 39310566
Alignment:
Q  173 tgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggat 226  Q
    ||||||||||||||||||||||  ||||| |||  |||||||||||||||||||    
T  39310619 tgaggctggtttcacagagcagtgaacacttccttctcttgacagtggagggat 39310566  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 226
Target Start/End: Original strand, 38750215 - 38750268
Alignment:
Q  173 tgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggat 226  Q
    ||||||||||||||||||||||  | ||| |||  |||||||||||||||||||    
T  38750215 tgaggctggtttcacagagcagtgatcacttccttctcttgacagtggagggat 38750268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0754 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0754
Description:

Target: scaffold0754; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 3912 - 4012
Alignment:
Q  172 gtgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagc 271  Q
    |||||||||||||||||||||||| || ||||| |||||   ||||||||||||  || | | |||||||||| || ||| || ||| ||||||||||||    
T  3912 gtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttccagtccactaagcccggtgagcctagc 4011  T
Q  272 c 272  Q
    |    
T  4012 c 4012  T

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Target: scaffold0563 (Bit Score: 37; Significance: 0.000000000008; HSPs: 5)
Name: scaffold0563
Description:

Target: scaffold0563; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 10444 - 10544
Alignment:
Q  172 gtgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagc 271  Q
    |||||||||||||||||||||||| || ||||| |||||   ||||||||||||  || | | |||||||||| || ||| || ||| ||||||||||||    
T  10444 gtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttccagtccactaagcccggtgagcctagc 10543  T
Q  272 c 272  Q
    |    
T  10544 c 10544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0563; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 762 - 862
Alignment:
Q  172 gtgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagc 271  Q
    |||||| ||||||||||||||||| || ||||| |||||   ||||||||||||  || | | |||||||||| || ||| || ||| ||||||||||||    
T  762 gtgaggttggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttccagtccactaagcccggtgagcctagc 861  T
Q  272 c 272  Q
    |    
T  862 c 862  T

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Target: scaffold0563; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 3355 - 3255
Alignment:
Q  172 gtgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagc 271  Q
    |||||||||||||||||||||||| || || || |||||   ||||||||||||  || | | |||||||||| || ||| || ||| ||||||||||||    
T  3355 gtgaggctggtttcacagagcagcgaatacttctggctcccaacagtggagggactacaggctgctgcacttccagtccactaagcccggtgagcctagc 3256  T
Q  272 c 272  Q
    |    
T  3255 c 3255  T

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Target: scaffold0563; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 272
Target Start/End: Complemental strand, 5183 - 5083
Alignment:
Q  172 gtgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagc 271  Q
    |||||||||||||||||||||||| || || || |||||   ||||||||||||  || | | |||||||||| || ||| || ||| ||||||||||||    
T  5183 gtgaggctggtttcacagagcagcgaatacttctggctcccaacagtggagggactacaggctgctgcacttccagtccactaagcccggtgagcctagc 5084  T
Q  272 c 272  Q
    |    
T  5083 c 5083  T

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Target: scaffold0563; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 7579 - 7679
Alignment:
Q  172 gtgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagc 271  Q
    |||||||||||||||||||||||| || || || |||||   ||||||||||||  || | | |||||||||| || ||| || ||| ||||||||||||    
T  7579 gtgaggctggtttcacagagcagcgaatacttctggctcccaacagtggagggactacaggctgctgcacttccagtccactaagcccggtgagcctagc 7678  T
Q  272 c 272  Q
    |    
T  7679 c 7679  T

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Target: scaffold0496 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0496
Description:

Target: scaffold0496; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 82 - 134
Target Start/End: Complemental strand, 12351 - 12299
Alignment:
Q  82 atgccggcctgcccgctccaagttgagagttggccaatgggacctaggcgaag 134  Q
    |||| |||||| || |||||||||||||||||| |||||||||||||||||||    
T  12351 atgctggcctgaccactccaagttgagagttggtcaatgggacctaggcgaag 12299  T

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Target: scaffold0492 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0492
Description:

Target: scaffold0492; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 172 - 272
Target Start/End: Original strand, 804 - 904
Alignment:
Q  172 gtgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagc 271  Q
    |||||||||||||||||||||||| || ||||| |||||   ||||||||||||  || | | |||||||||| || ||| || ||| ||||||||||||    
T  804 gtgaggctggtttcacagagcagcgaatacctctggctcccaacagtggagggactacaggctgctgcacttccagtccactaagcccggtgagcctagc 903  T
Q  272 c 272  Q
    |    
T  904 c 904  T

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Target: chr3 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 172 - 282
Target Start/End: Complemental strand, 43396244 - 43396134
Alignment:
Q  172 gtgaggctggtttcacagagcagcaaacacctccggctcttgacagtggagggataactgaccgctgcacttctagcccaatatgcctggtgagcctagc 271  Q
    |||||||||| ||||||||||| |||||||||||  ||| || ||||||| |||| ||   ||||||| | || | ||||  || ||| |||||||||||    
T  43396244 gtgaggctggattcacagagcaacaaacacctcctactcctggcagtggaaggatcacatgccgctgcccctccaacccataatacctagtgagcctagc 43396145  T
Q  272 cacttgaacca 282  Q
    | |||||||||    
T  43396144 cccttgaacca 43396134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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