View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8784_low_11 (Length: 334)
Name: NF8784_low_11
Description: NF8784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8784_low_11 |
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Alignment Details
Target: chr4 (Bit Score: 294; Significance: 1e-165; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 18 - 319
Target Start/End: Original strand, 48605189 - 48605490
Alignment:
| Q |
18 |
ataaggtctacaaaatattgatgaccaatttgaccatctttccacgtcatctttgccggagcccttccatagtgaactccatcgttacaccggttatcaa |
117 |
Q |
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| T |
48605189 |
ataaggtctacaaaatattgatgaccaatttgaccatctttccacgtcatctttgccggagcccttccatagtgaactccatcgttacaccggttatcaa |
48605288 |
T |
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| Q |
118 |
aatgccatggaaatgtcatatcaaagttatcaatcacaccagatagaacgcccgcttgcttcaatttttctaagaaaacaccgttaaataactccatctt |
217 |
Q |
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| T |
48605289 |
aatgccatggaaatgtcatatcaaagttatcaatcacaccagatagaacgcccacttgcttcaatttttctaagaaaacaccgttaaataactccatctt |
48605388 |
T |
|
| Q |
218 |
gttaggattatatgctagcgatcttgcatatccaccagttgcaactgtagtccggtaaaagactctcggcaatgccaatcccctttgctgcactgtcttc |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
48605389 |
gttaggattatatgctagcgatcttgcatatccaccagttgcaactgtagtccggtaaaagactctcggcactgccaatcccctttgctgcactgtcttc |
48605488 |
T |
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| Q |
318 |
at |
319 |
Q |
| |
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|| |
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| T |
48605489 |
at |
48605490 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 183; E-Value: 6e-99
Query Start/End: Original strand, 21 - 319
Target Start/End: Original strand, 48610788 - 48611086
Alignment:
| Q |
21 |
aggtctacaaaatattgatgaccaatttgaccatctttccacgtcatctttgccggagcccttccatagtgaactccatcgttacaccggttatcaaaat |
120 |
Q |
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||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||| |
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| T |
48610788 |
aggtccacaaaatattgatgaccaatttgaccatctttccacttcatctttgccggagcccttccataatgaactccatcgttacatcggttatcaaaat |
48610887 |
T |
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| Q |
121 |
gccatggaaatgtcatatcaaagttatcaatcacaccagatagaacgcccgcttgcttcaatttttctaagaaaacaccgttaaataactccatcttgtt |
220 |
Q |
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|||| |||||||||||||||||||||||||||||||| || | || ||||| |||||| | ||| |||||||||||||| || || | ||||||||||| |
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| T |
48610888 |
gccacggaaatgtcatatcaaagttatcaatcacaccggagacaatgcccgtttgctttagtttctctaagaaaacaccattgaacacatccatcttgtt |
48610987 |
T |
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| Q |
221 |
aggattatatgctagcgatcttgcatatccaccagttgcaactgtagtccggtaaaagactctcggcaatgccaatcccctttgctgcactgtcttcat |
319 |
Q |
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||||||| ||||||| ||||||||||||||||| ||||| || ||| |||||||||| ||||| |||| |||||||||||||||| |||||||||||| |
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| T |
48610988 |
aggattaaatgctagtgatcttgcatatccaccggttgcgaccgtattccggtaaaacactcttggcagtgccaatcccctttgcctcactgtcttcat |
48611086 |
T |
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