View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8784_low_18 (Length: 248)
Name: NF8784_low_18
Description: NF8784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8784_low_18 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 183; Significance: 4e-99; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 1 - 234
Target Start/End: Complemental strand, 12615182 - 12614949
Alignment:
| Q |
1 |
ttacttgagatccaaggaacttactatcaaactaattaactgaatt-gccatgcaagcaattgacatatatatgttgttaggattcagttaagaggctta |
99 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
|
|
| T |
12615182 |
ttacttgagatccaaggaacttactatcaaactaattaactgaatttgccatgcaagcaattgacatatatatgttgttaggattcagctaagaggctta |
12615083 |
T |
|
| Q |
100 |
aatagtatgcagtagtatatagttagttacaatacactctagttataattaatccactcttgcattaagccacctgggttggtcagatagtactgattta |
199 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||| ||||||||| ||||||| | |||||| |
|
|
| T |
12615082 |
aatagtatgcagtagtatatagttagttacaaaacactctagttacaattaatccactcttgcattaagccacttgggttggttagatagtgc-gattta |
12614984 |
T |
|
| Q |
200 |
agacattgaagtgtgtttctctcaagatctgatgt |
234 |
Q |
| |
|
||||||||||||||||| ||||||||||| |||| |
|
|
| T |
12614983 |
ggacattgaagtgtgtttttctcaagatctcatgt |
12614949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 1 - 144
Target Start/End: Original strand, 12582054 - 12582196
Alignment:
| Q |
1 |
ttacttgagatccaaggaacttactatcaaactaattaactgaa-ttgccatgcaagcaattgac--atatatatgttgttaggattcagttaagaggct |
97 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| |||||||| |||||| ||||| |||||| |||| | |||| || ||||||||| |||||| |
|
|
| T |
12582054 |
ttacttgagatccaagtaacttactatcaaac----taactgaatttgccacacaagcgattgacggttatagaggttgctaagattcagtttcgaggct |
12582149 |
T |
|
| Q |
98 |
taaatagtatgcagtagtatatagttagttacaatacactctagtta |
144 |
Q |
| |
|
|| |||||| |||||||||| || ||||||||| | || |||||||| |
|
|
| T |
12582150 |
tagatagtacgcagtagtatgtaattagttacactgcattctagtta |
12582196 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University