View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8784_low_21 (Length: 240)
Name: NF8784_low_21
Description: NF8784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8784_low_21 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 46863345 - 46863567
Alignment:
| Q |
1 |
catcttggtcttccaaatttcttgtgtttttagttcccccaaatgtcactcatttcgtaacaaaatatttttcctttgacaacaaccatggtttttcctg |
100 |
Q |
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| T |
46863345 |
catcttggtcttccaaatttcttgtgtttttagttcccccaaatgtcactcatttcgtaacaaaatatttttcctttgacaacaaccatggtttttcctg |
46863444 |
T |
|
| Q |
101 |
acaatattccaacctctaagatgtcaccaccgcaatttgccacatcaaacaacgatatcgttgaagtgagacctcgatttccaatgaaaaatgaaaactt |
200 |
Q |
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| T |
46863445 |
acaatattccaacctctaagatgtcaccgccgcaatttgctacatcaaacaacgatatcgttgaagtgagacctcgatttccaatgaaaaatgaaaactt |
46863544 |
T |
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| Q |
201 |
tgaacaacattcaacattgtatc |
223 |
Q |
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| T |
46863545 |
tgaacaacattcaacattgtatc |
46863567 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 82 - 212
Target Start/End: Original strand, 46898539 - 46898669
Alignment:
| Q |
82 |
acaaccatggtttttcctgacaatattccaacctctaagatgtcaccaccgcaatttgccacatcaaacaacgatatcgttgaagtgagacctcgatttc |
181 |
Q |
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| T |
46898539 |
acaaccatgaattttccagacgatattccaacctgtaggatgtcaccaccgcagtttgcttcatccaacaacgatatcattgaagtgaggcctcaaatcc |
46898638 |
T |
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| Q |
182 |
caatgaaaaatgaaaactttgaacaacattc |
212 |
Q |
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| T |
46898639 |
caatgcaaaacgatcactttgagccacattc |
46898669 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 74 - 134
Target Start/End: Original strand, 46872731 - 46872791
Alignment:
| Q |
74 |
ctttgacaacaaccatggtttttcctgacaatattccaacctctaagatgtcaccaccgca |
134 |
Q |
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| T |
46872731 |
ctttgacaacaaccatggcttttccagatgatattccaacctctaagataacaccaccgca |
46872791 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 71 - 137
Target Start/End: Original strand, 46890043 - 46890110
Alignment:
| Q |
71 |
ttcctttgacaacaa-ccatggtttttcctgacaatattccaacctctaagatgtcaccaccgcaatt |
137 |
Q |
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|||||||| |||||| |||||| |||||| || |||||||||||||||||||||| ||||||||||| |
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| T |
46890043 |
ttcctttggcaacaaaccatggcttttccagatgatattccaacctctaagatgtccccaccgcaatt |
46890110 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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