View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8784_low_22 (Length: 240)
Name: NF8784_low_22
Description: NF8784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8784_low_22 |
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Alignment Details
Target: chr3 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 49372173 - 49372394
Alignment:
| Q |
1 |
ataaaatcccttaacagagtgctgcatttacaagagaataaaatcatcaacctggagactctgtccatgcgtgtctttgatgcggctttctgcaatggcc |
100 |
Q |
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||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
49372173 |
ataaaatcccttaacag--tgctgcatttacaagagaataaaatcatcaacctggagactctgtccatgcgtgtcttcgatgcggctttctgcaatggcc |
49372270 |
T |
|
| Q |
101 |
tacaatccctttaaccttcttaaaactgctggctatacccttggaaatcccaccttccaatctagcttttctcacaactgccatccgggcctctgagaac |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
49372271 |
tacaatccctttaaccttcttaaaactgctggctatacccttggaaatcccaccttccaatctagcttttctcacaactgccatccgggcctctgagaac |
49372370 |
T |
|
| Q |
201 |
atccctcccaaatatccagttaac |
224 |
Q |
| |
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|||||||||||||||||||||||| |
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| T |
49372371 |
atccctcccaaatatccagttaac |
49372394 |
T |
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