View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8784_low_24 (Length: 234)
Name: NF8784_low_24
Description: NF8784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8784_low_24 |
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| [»] chr5 (3 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 121; Significance: 4e-62; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 121; E-Value: 4e-62
Query Start/End: Original strand, 11 - 234
Target Start/End: Complemental strand, 39169375 - 39169159
Alignment:
| Q |
11 |
taaacaacctatgtcttgttcttgttattggaaagtnnnnnnncataaccatgaaacagaaattgcaaattgaaagaacctaatataaatgaaaagcatc |
110 |
Q |
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| T |
39169375 |
taaaccacctatgtcttgttcttgttattggaaagtaaaaaaacataaacatgaaacagaaattgcaaattgaaagaacctaatataaatgaaaagcatc |
39169276 |
T |
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| Q |
111 |
ttcttgttcttattattattggaatnnnnnnnnnnncatcaacgtaggttagattttttaatcttgcaactcctccaatggaacagagagagggtcttgt |
210 |
Q |
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| T |
39169275 |
ttcttgttcttattattattggaataaaaaaaaa---atcaacataagttatattttttaatcttgcaactcctccaatggaac----ggagggtcttgt |
39169183 |
T |
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| Q |
211 |
aaagtgttctctgatggcctcacc |
234 |
Q |
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| T |
39169182 |
aaagtgttctctgatggcctcacc |
39169159 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 54 - 113
Target Start/End: Complemental strand, 40418781 - 40418724
Alignment:
| Q |
54 |
cataaccatgaaacagaaattgcaaattgaaagaacctaatataaatgaaaagcatcttc |
113 |
Q |
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| T |
40418781 |
cataaacatgaaacaaaaattgcaaatagaaagaaccta--ataaatgaaaagcatcttc |
40418724 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 54 - 95
Target Start/End: Complemental strand, 38988203 - 38988162
Alignment:
| Q |
54 |
cataaccatgaaacagaaattgcaaattgaaagaacctaata |
95 |
Q |
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| T |
38988203 |
cataaacatgaaacagaaattgcaaatagaaagaacctaata |
38988162 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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