View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8784_low_25 (Length: 231)
Name: NF8784_low_25
Description: NF8784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8784_low_25 |
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Alignment Details
Target: chr4 (Bit Score: 80; Significance: 1e-37; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 1 - 84
Target Start/End: Original strand, 46863057 - 46863140
Alignment:
| Q |
1 |
caaacacaaacttaattaacccatttataaaatatgatagaaaataaaaactcttccttaatcgtactcaaagacaacatgaaa |
84 |
Q |
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| T |
46863057 |
caaacacaaacttaattaacccatttataaaatatgatagaaaataaaaactcttccttaatcgtacccaaagacaacatgaaa |
46863140 |
T |
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Target: chr4; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 152 - 231
Target Start/End: Original strand, 46863137 - 46863216
Alignment:
| Q |
152 |
gaaaggatagtgtaatagttgtggctagggttttgacttggtggtcccaactataaaaccttaaacctcgtcactgcctc |
231 |
Q |
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| T |
46863137 |
gaaaggatagtgtaatagttgtggctagggttttgacttggtggtcccaactaaaaaaccttaaacctcgtcactgcctc |
46863216 |
T |
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