View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8784_low_4 (Length: 376)
Name: NF8784_low_4
Description: NF8784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8784_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 183; Significance: 7e-99; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 183; E-Value: 7e-99
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 246023 - 246255
Alignment:
| Q |
1 |
ttattgaactcatttaaaatgatatataaataaaactgaatcaattcaaactagccat----gtgtaatttggttacctgagcgttaatttcagtggtag |
96 |
Q |
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| T |
246023 |
ttattgaactcgtttaaaatgatatataaataaaactgaatcaattcaaactagatattaatgtgtaatttggttacctgagcgttaatttcagtggtag |
246122 |
T |
|
| Q |
97 |
tggtggtacttgaatgatctgaacaagcttttttgtacctatcaattgttgaccttatgctacaagcaacatataagaatcatttatttagaaatattta |
196 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||||||||||||| |
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| T |
246123 |
tggtggtacttgaatgatctgaacaagcttttttgtacctatcaattgttgaccttatgctacaagcaacacataagaatc----atttagaaatattta |
246218 |
T |
|
| Q |
197 |
tcattttcttcaatctatcatacacacttagtcactg |
233 |
Q |
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||||||||||||||||||| ||||||||||||||||| |
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| T |
246219 |
tcattttcttcaatctatcttacacacttagtcactg |
246255 |
T |
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