View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8784_low_5 (Length: 375)
Name: NF8784_low_5
Description: NF8784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8784_low_5 |
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Alignment Details
Target: chr2 (Bit Score: 331; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 21 - 359
Target Start/End: Complemental strand, 9442537 - 9442199
Alignment:
| Q |
21 |
atgtgatgtataaaattttctcaaccagtgttattaaatagcggctatcacaacactatagcataacgaaagttgaacaagtcgctattattctgcaata |
120 |
Q |
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| T |
9442537 |
atgtgatgtataaaattttctcaaccagtgttattaaatagcggctatcacaacactatagcataacgaaagttgaacaagtcactattattctgcaata |
9442438 |
T |
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| Q |
121 |
tagtagaaaatgttgttatatagcgacactattgcaatgctgcattgcagaatttgaacaatctactattttccgcaaatgacaacactgtttatcaagc |
220 |
Q |
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| T |
9442437 |
tagtagaaaatgttgttatatagcgacactattgcaatgctgcattgcagaatttgaacaatctactattttccgcaaatgacaacactgtttatcaagc |
9442338 |
T |
|
| Q |
221 |
atgccattgaagaattgcttcgatgtgcaagatcattgcctcagtgtgattgttgtttaatgaagtggactatgacttgatgttagccttttgcttaatt |
320 |
Q |
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| T |
9442337 |
atgccattgaagaattgcttcgatgtgcaagatcattgcctcagtgtgattgttgtttaatgaagtggactatgacttgatgttagccttttgcttaatt |
9442238 |
T |
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| Q |
321 |
acagcgatactcttacattgttttaatcaacaattcttg |
359 |
Q |
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| T |
9442237 |
acagcgatactcttaaattgttttaatcaacaattcttg |
9442199 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 255 - 318
Target Start/End: Complemental strand, 9453567 - 9453505
Alignment:
| Q |
255 |
attgcctcagtgtgattgttgtttaatgaagtggactatgacttgatgttagccttttgcttaa |
318 |
Q |
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| T |
9453567 |
attgcttcaatgtgattgtt-tttaatgaagtggactctgatttgatgttagtcttgtgcttaa |
9453505 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 74 - 122
Target Start/End: Complemental strand, 1912583 - 1912535
Alignment:
| Q |
74 |
cactatagcataacgaaagttgaacaagtcgctattattctgcaatata |
122 |
Q |
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|||| ||||||||||||| |||||||| |||||||| |||||| ||||| |
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| T |
1912583 |
cactttagcataacgaaatttgaacaaatcgctattgttctgcgatata |
1912535 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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