View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8784_low_9 (Length: 351)
Name: NF8784_low_9
Description: NF8784
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8784_low_9 |
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| [»] scaffold0086 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 283; Significance: 1e-158; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 283; E-Value: 1e-158
Query Start/End: Original strand, 30 - 332
Target Start/End: Complemental strand, 19230721 - 19230419
Alignment:
| Q |
30 |
aaaacccctttgatgtggtgttaggggttttaggatttgatttgataactcgaaaattttgtctttttctgctcatgattttgatctagtttgaggtttt |
129 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19230721 |
aaaacccctttgatgtggtgttaggggttttaggatttgatttgataactcgaaaattttgtctttttctgctcatgattttgatctagtttgaggtttt |
19230622 |
T |
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| Q |
130 |
catccaaagacacaaactttagttgttttgttgattagggtaaattatgtaccacatacattgaaggtgtgtctggtgttcaacatgtgttagtgtccaa |
229 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
19230621 |
catccaaagacacaaactttagttgttttgttgattagggtaaattatgtaccacatacattgaaggtgtgtctggtgttcaacatgtgttagtgtccaa |
19230522 |
T |
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| Q |
230 |
caccacatctacgcatgcagtcacgttaaattattattgatatctattttgaagtatctatgttttgtttggtgtttgtgtttacgtcagtgcttgatag |
329 |
Q |
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||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| | ||| |||||||||||||||||| |
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| T |
19230521 |
caccacatcgacgcatgcagtcacgttaaattattatcgatatctattttgaagtatctatgttttgtttggtgtctctgtctacgtcagtgcttgatag |
19230422 |
T |
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| Q |
330 |
ggg |
332 |
Q |
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||| |
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| T |
19230421 |
ggg |
19230419 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 136; E-Value: 7e-71
Query Start/End: Original strand, 30 - 257
Target Start/End: Complemental strand, 19239905 - 19239689
Alignment:
| Q |
30 |
aaaacccctttgatgtggtgttaggggttttaggatttgatttgataactcgaaaattttgtctttttctgctcatgattttgatctagtttgaggtttt |
129 |
Q |
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||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |
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| T |
19239905 |
aaaacccatttgatgtggtgttaggggttttaggatttgatttgataactcgaaaattttgtctttt-------atgattttgatctactttgaggtttt |
19239813 |
T |
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| Q |
130 |
catccaaagacacaaactttagttgttttgttgattagggtaaattatgtaccacatacattgaaggtgtgtctggtgttcaacatgtgttagtgtccaa |
229 |
Q |
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|||||||||| ||||||||| ||||||||||| || ||| ||||||||| |||||||||||||| ||||||||||||||||||||||||||||||| | |
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| T |
19239812 |
catccaaagatacaaacttt---tgttttgttgactacggttaattatgtagcacatacattgaag-tgtgtctggtgttcaacatgtgttagtgtccta |
19239717 |
T |
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| Q |
230 |
caccacatctacgcatgcagtcacgtta |
257 |
Q |
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||||| ||| || ||||||||||||||| |
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| T |
19239716 |
caccagatcgacacatgcagtcacgtta |
19239689 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0086 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0086
Description:
Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 189 - 231
Target Start/End: Original strand, 29743 - 29785
Alignment:
| Q |
189 |
attgaaggtgtgtctggtgttcaacatgtgttagtgtccaaca |
231 |
Q |
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| T |
29743 |
attgaaggtgtgtccagtgttcaacatgtgtcagtgtccaaca |
29785 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Original strand, 17195238 - 17195283
Alignment:
| Q |
189 |
attgaaggtgtgtctggtgttcaacatgtgttagtgtccaacacca |
234 |
Q |
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|||||||||||||| |||| ||||||||||| ||||||||||||| |
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| T |
17195238 |
attgaaggtgtgtcccgtgtacaacatgtgttggtgtccaacacca |
17195283 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 234
Target Start/End: Complemental strand, 35390678 - 35390633
Alignment:
| Q |
189 |
attgaaggtgtgtctggtgttcaacatgtgttagtgtccaacacca |
234 |
Q |
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|||||||||||||||||||| ||||| ||||| ||||| ||||||| |
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| T |
35390678 |
attgaaggtgtgtctggtgtccaacacgtgttggtgtcaaacacca |
35390633 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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