View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8785_high_1 (Length: 704)
Name: NF8785_high_1
Description: NF8785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8785_high_1 |
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Alignment Details
Target: chr1 (Bit Score: 479; Significance: 0; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 479; E-Value: 0
Query Start/End: Original strand, 20 - 572
Target Start/End: Original strand, 21032725 - 21033279
Alignment:
| Q |
20 |
atgtactctaattcgttaaacatattatttatactcgcgatttcattgacttgtcac-gatgtttgaattgcaagaatatacaagaaaatctaaaaccaa |
118 |
Q |
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| T |
21032725 |
atgtactctaattcgttaaacataatatttatactcgcgatttcattgacttgtcacagatgtttgaattgcaagaatatacaaaaaattctaaaaccaa |
21032824 |
T |
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| Q |
119 |
gttgtggactggatactgtccgatggagcttccggcaaactctccatctattacataattcttctctctaaagcatttatccatcttcccatctatcttt |
218 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
21032825 |
gttgtggactggatactgtccgatggagcttccggcaaactctccatctgttacataattcttctctctaaagcatttatccatcttcccatctaccttt |
21032924 |
T |
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| Q |
219 |
tcttttacgcgtttggatcatctgtagccgtcgtgccattcactacgaaatgggtgactgttggctgcagatgatccaaaactaaacctttcacccttat |
318 |
Q |
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| T |
21032925 |
tcttttacgcgtttggatcatctgcagccgtcgtgccattcactacgaaatgggtgactgtttgctgcagatgatccaaaactaaacctttcacccttat |
21033024 |
T |
|
| Q |
319 |
ttgtgtatttctaccgtagagattagagagcaagggaaagaatctatataggtgagtcaacgctacttgatcttgaacgatattattgtaggatcttctt |
418 |
Q |
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| T |
21033025 |
ttttgtatttctaccgtagagactagagagcaagagaaagaatctatataggtgagtcaacgctacttgatcttgaacgatattactgtaggatcttctt |
21033124 |
T |
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| Q |
419 |
gggtctctcttatctttccatcaaaatctcaatgattagattaatctaagaattgcaagattaaaatcttaa-ctttagatcaattcaaatgcctgataa |
517 |
Q |
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| T |
21033125 |
gggtctctcttatctttccatcaaaatctcaatgattagattaatctaagaattgcaagattaaaatcttaaccattagatcaattgaaatgcctgataa |
21033224 |
T |
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| Q |
518 |
ttgattaaagtgggtaaagggacccgagaggatttggatccaatgtaaagctcta |
572 |
Q |
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| T |
21033225 |
ttgattaaagtgggtaaagggacctgagagtatttggatccaatgtaaagctcta |
21033279 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 574 - 695
Target Start/End: Original strand, 21033306 - 21033428
Alignment:
| Q |
574 |
atagcttcttaatgtgacattagacaaattgttgattaccaggaaattaatgagtgtattggtttcgatgnnnnnnnnnnnnncttcttataataaggat |
673 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||| |
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| T |
21033306 |
atagcttcttaatgtgacattagacaaattgttgattaccaggaaattaacaagtgtattggtttcgatgttttttggtttttcttcttataataaggat |
21033405 |
T |
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| Q |
674 |
caga-gggagtaccagaattatc |
695 |
Q |
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|||| ||||||||| |||||||| |
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| T |
21033406 |
cagaggggagtaccggaattatc |
21033428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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