View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8785_low_2 (Length: 484)
Name: NF8785_low_2
Description: NF8785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8785_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 441; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 441; E-Value: 0
Query Start/End: Original strand, 18 - 474
Target Start/End: Original strand, 5750198 - 5750654
Alignment:
| Q |
18 |
ataccatactaccatttgcacatgcatatacacacaacacctaaaattgaagaataaagtatttaacatagctaaccaaaacaaacgaagataataaaac |
117 |
Q |
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| T |
5750198 |
ataccatactaccatttgcacatgcatatacacacaacacctaaaattgaagaataaagtatttaacatagctaaccaaaacaaacgaagataataaaac |
5750297 |
T |
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| Q |
118 |
caagattattacatgagtaaattaaccaagaggtcacaaaaatcaactaatttgaacttgaagactctaaattaaattggtcaattaacgtagaaccttt |
217 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |
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| T |
5750298 |
caagattattacatgagtaaattaaccaagaggtcacaaaaatcaactaatttgaacttgaagactctaaattaaatttgtcaattaacgtagaaccttt |
5750397 |
T |
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| Q |
218 |
aaaactacttgaaacactccattgatcggagtttgccaccgacgacgacgaaggcaccccgttaccgcacttagccaccgtccttacactttctatcaag |
317 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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| T |
5750398 |
aaaactacttgaaacactccattgatcggagtttgccaccgacgacgacgaaggcaccccgttaccgcacttagccaccgttcttacactttctatcaag |
5750497 |
T |
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| Q |
318 |
gcctccgtcctcgactcttgcgacaaaatctccgacaacttctctggacttatcaccaatttcaccttccacactccactactattgtacctcggaaaca |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5750498 |
gcctccgtcctcgactcttgcgacaaaatctccgacaacttctctggacttatcaccaatttcaccttccacactccactactattgtacctcggaaaca |
5750597 |
T |
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| Q |
418 |
cttcatgttccgaccaactattgttattattgttattgttgctgctattcttctcac |
474 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| |
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| T |
5750598 |
cttcatgttccgaccaactattgttattattgttattgttgttgctattcttgtcac |
5750654 |
T |
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