View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF8785_low_5 (Length: 239)
Name: NF8785_low_5
Description: NF8785
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8785_low_5 |
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| [»] chr2 (1 HSPs) |
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| [»] chr1 (1 HSPs) |
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| [»] chr7 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr2 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 21 - 239
Target Start/End: Complemental strand, 2212248 - 2212030
Alignment:
| Q |
21 |
tgttcttgagaataaacattgaagcccgatgaaaagaaaaaattggagctttgaattcaagcatgggtaattatgaaaaatatatcttttaacaaaaagc |
120 |
Q |
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|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |
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| T |
2212248 |
tgttcttgagaataaacattgaagcctgatgaaaagaaaaaattggagctttgaattgaagcatgggtaattatgaaaaatatattttttaacaaaaagc |
2212149 |
T |
|
| Q |
121 |
aaattccagaattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgctttggatgcaaacttgcttttttaaaattgctttt |
220 |
Q |
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|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
2212148 |
aaattccataattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgttttggatgcaaacttgcttttttataattgctttt |
2212049 |
T |
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| Q |
221 |
gactgtgtccaaacatcat |
239 |
Q |
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||||||||||||||||||| |
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| T |
2212048 |
gactgtgtccaaacatcat |
2212030 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 17 - 239
Target Start/End: Original strand, 9028196 - 9028418
Alignment:
| Q |
17 |
aaagtgttcttgagaataaacattgaagcccgatgaaaagaaaaaattggagctttgaattcaagcatgggtaattatgaaaaatatatcttttaacaaa |
116 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||||||| |
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| T |
9028196 |
aaagtgtgcttgagaataaacattgaagcctgatgaaaagaaaaaattggtgctttgaattgaagcatgggtaattatgaaaaatatattttttaacaaa |
9028295 |
T |
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| Q |
117 |
aagcaaattccagaattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgctttggatgcaaacttgcttttttaaaattgc |
216 |
Q |
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| |||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
9028296 |
atgcaaattccagaattgcttttgagtttccgcaaaagctacaatttgtggcttcctgttaactcacgttttggatgcaaacttgcttttttaaaattgc |
9028395 |
T |
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| Q |
217 |
ttttgactgtgtccaaacatcat |
239 |
Q |
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||||||||||||||||||||||| |
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| T |
9028396 |
ttttgactgtgtccaaacatcat |
9028418 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 87; Significance: 8e-42; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 129 - 239
Target Start/End: Complemental strand, 3374990 - 3374880
Alignment:
| Q |
129 |
gaattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgctttggatgcaaacttgcttttttaaaattgcttttgactgtgt |
228 |
Q |
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|||||||||||||||||||| ||||| |||||||||| |||||||||||||||||| |||||||||||||||||||||| | |||||||||||||||||| |
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| T |
3374990 |
gaattgcttttgagttgccgtagaagttacaatttgtagcttcctgttaactcacgttttggatgcaaacttgctttttcagaattgcttttgactgtgt |
3374891 |
T |
|
| Q |
229 |
ccaaacatcat |
239 |
Q |
| |
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||||||||||| |
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| T |
3374890 |
ccaaacatcat |
3374880 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 137 - 238
Target Start/End: Complemental strand, 42739728 - 42739627
Alignment:
| Q |
137 |
tttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgctttggatgcaaacttgcttttttaaaattgcttttgactgtgtccaaacat |
236 |
Q |
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||||||||||||||||||||| ||| ||||||| | | ||| |||| ||||| | ||||| ||| |||| ||| |||||||| | ||| ||||||||| |
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| T |
42739728 |
tttgagttgccgcagaagctatgttttctggcttcttctaaacccacgttttgggttcaaacctgcgttttcaaatttgcttttaattgtatccaaacat |
42739629 |
T |
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| Q |
237 |
ca |
238 |
Q |
| |
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|| |
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| T |
42739628 |
ca |
42739627 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 70; Significance: 1e-31; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 39 - 238
Target Start/End: Original strand, 30086272 - 30086471
Alignment:
| Q |
39 |
ttgaagcccgatgaaaag-aaaaaattggagctttgaattcaagcatgggtaattatgaaaaatatatcttttaacaaaaag-caaattccagaattgct |
136 |
Q |
| |
|
||||||||||| |||||| |||||| ||||| ||||| || || |||||||| ||||||||||||||| | |||||||||| |||| |||| ||||||| |
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| T |
30086272 |
ttgaagcccgaggaaaaggaaaaaaatggag-tttgagttgaatcatgggtatttatgaaaaatatatttcttaacaaaaaaacaaactccaaaattgct |
30086370 |
T |
|
| Q |
137 |
tttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgctttggatgcaaacttgcttttttaaaattgcttttgactgtgtccaaacat |
236 |
Q |
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||| |||||| ||||||||||||||||| |||||| ||||||| |||| |||| | ||| || |||||| |||||||||||||| ||| ||||||||| |
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| T |
30086371 |
ttt-agttgcagcagaagctacaatttgcggcttcatgttaacccacgttttgaccgtaaaattactttttcaaaattgcttttgattgtatccaaacat |
30086469 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 82 - 220
Target Start/End: Complemental strand, 26124952 - 26124816
Alignment:
| Q |
82 |
catgggtaattatgaaaaatatatcttttaacaaaaagcaaattccagaattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactc |
181 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||||||| || |||||||||||| |||||| || |||||| ||||| |||||||| |||||| | |
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| T |
26124952 |
catgggtatttatggaaaatatatttcttaacaaaaagcaaactctagaattgctttt-agttgctaca-aagctataatttatggcttccagttaaccc |
26124855 |
T |
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| Q |
182 |
acgctttggatgcaaacttgcttttttaaaattgctttt |
220 |
Q |
| |
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||| |||| ||| ||| || ||||||||||||||||||| |
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| T |
26124854 |
acgttttgaatgtaaaattacttttttaaaattgctttt |
26124816 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 31 - 238
Target Start/End: Original strand, 40742936 - 40743141
Alignment:
| Q |
31 |
aataaacattgaagcccgatgaaaagaaaaaat--tggagctttgaattcaagcatgggtaattatgaaaaatatatcttttaac-aaaaagcaaattcc |
127 |
Q |
| |
|
|||||||||||||||| || |||||||||||| | ||| ||||| || || |||||||| ||||||||||||||| | ||||| ||||| |||| ||| |
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| T |
40742936 |
aataaacattgaagcctgaggaaaagaaaaaaaaatagag-tttgagttgaatcatgggtatttatgaaaaatatatttcttaacaaaaaaacaaactcc |
40743034 |
T |
|
| Q |
128 |
agaattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgctttggatgcaaacttgcttttttaaaattgcttttgactgtg |
227 |
Q |
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| |||| ||||| | | ||||||||||||||||| |||||| || ||| |||| |||| || ||| ||| ||||| ||||||||||||| ||| |
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| T |
40743035 |
aaaattacttttaatt----gcagaagctacaatttgcggcttcaagtaaacccacgttttgactgtaaaattgttttttcgaaattgcttttgattgta |
40743130 |
T |
|
| Q |
228 |
tccaaacatca |
238 |
Q |
| |
|
||||||||||| |
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| T |
40743131 |
tccaaacatca |
40743141 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 67; Significance: 7e-30; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 67; E-Value: 7e-30
Query Start/End: Original strand, 97 - 235
Target Start/End: Original strand, 33899797 - 33899934
Alignment:
| Q |
97 |
aaaatatatcttttaacaaaaagcaaattccagaattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgctttggatgcaa |
196 |
Q |
| |
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||||||||| | ||||||||||||||| |||| |||||||||| |||||||||||||||||||||||||||||||| |||||| |||| |||| ||| | |
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| T |
33899797 |
aaaatatatttcttaacaaaaagcaaactccaaaattgctttt-agttgccgcagaagctacaatttgtggcttccagttaacccacgttttgaatgtga |
33899895 |
T |
|
| Q |
197 |
acttgcttttttaaaattgcttttgactgtgtccaaaca |
235 |
Q |
| |
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| ||||||||| | |||||||||||| | | |||||||| |
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| T |
33899896 |
aattgctttttcagaattgcttttgattttatccaaaca |
33899934 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 122 - 167
Target Start/End: Original strand, 1313052 - 1313097
Alignment:
| Q |
122 |
aattccagaattgcttttgagttgccgcagaagctacaatttgtgg |
167 |
Q |
| |
|
||||||| ||||||||||||||||| ||| ||||| |||||||||| |
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| T |
1313052 |
aattccaaaattgcttttgagttgctgcaaaagctccaatttgtgg |
1313097 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 66; Significance: 3e-29; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 82 - 235
Target Start/End: Complemental strand, 35930102 - 35929950
Alignment:
| Q |
82 |
catgggtaattatgaaaaatatatcttttaacaaaaagcaaattccagaattgcttttgagttgccgcagaagctacaatttgtggcttcctgttaactc |
181 |
Q |
| |
|
|||||||| ||||| ||||||||| | ||||||||||||||| ||||||||||||||| ||||||||||||||||| |||||||||||||| |||||| | |
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| T |
35930102 |
catgggtatttatggaaaatatatttcttaacaaaaagcaaactccagaattgctttt-agttgccgcagaagctaaaatttgtggcttccagttaaccc |
35930004 |
T |
|
| Q |
182 |
acgctttggatgcaaacttgcttttttaaaattgcttttgactgtgtccaaaca |
235 |
Q |
| |
|
| |||||||| || ||||||||| | ||| |||||||| | | |||||||| |
|
|
| T |
35930003 |
atattttggatgtgaaattgctttttcacaatcgcttttgattttatccaaaca |
35929950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 97 - 239
Target Start/End: Complemental strand, 14958595 - 14958450
Alignment:
| Q |
97 |
aaaatatatcttttaacaaaaagcaaattccagaattgcttttgagttgccgcagaagctac----aatttgtggcttcctgttaactcacgctttggat |
192 |
Q |
| |
|
||||||||| | |||||||||| |||| |||| ||||| ||| |||||| ||||||||| || ||||| ||||||| | ||||| || ||||| | |
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| T |
14958595 |
aaaatatatttcttaacaaaaatcaaactccaaaattgattt-gagttgtcgcagaagccacccacaatttatggcttcttattaacccatattttggtt |
14958497 |
T |
|
| Q |
193 |
gcaaacttgcttttttaaaattgcttttgactgtgtccaaacatcat |
239 |
Q |
| |
|
| |||||||||||| || || ||||||| | |||||||||||||||| |
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|
| T |
14958496 |
gtaaacttgcttttctagaactgcttttcattgtgtccaaacatcat |
14958450 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 1e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 137 - 239
Target Start/End: Original strand, 9276332 - 9276434
Alignment:
| Q |
137 |
tttgagttgccgcagaagctacaatttgtggcttcctgttaactcacgctttggatgcaaacttgcttttttaaaattgcttttgactgtgtccaaacat |
236 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||| |||||| |||| ||||| || ||||||||||||| | |||||||||||| ||||| ||||||| |
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| T |
9276332 |
tttgagttgccgcagaagctacaatttatagcttcttgttaaaccacgttttggctgtaaacttgctttttcagaattgcttttgagtgtgttcaaacat |
9276431 |
T |
|
| Q |
237 |
cat |
239 |
Q |
| |
|
||| |
|
|
| T |
9276432 |
cat |
9276434 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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