View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF8786_high_10 (Length: 210)
Name: NF8786_high_10
Description: NF8786
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF8786_high_10 |
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Alignment Details
Target: chr5 (Bit Score: 129; Significance: 6e-67; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 129; E-Value: 6e-67
Query Start/End: Original strand, 1 - 192
Target Start/End: Complemental strand, 24653639 - 24653440
Alignment:
| Q |
1 |
gtgaccaataacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattctaaaaga----gtttattcctatgagtttcctagacaca |
96 |
Q |
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| T |
24653639 |
gtgaccattaacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattacaaaaaaaaaaggttattcctataagttacctagacaca |
24653540 |
T |
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| Q |
97 |
aattcattttaattttttat---aagttt-catttagtgatagctaattatttcaaaaataaataaatattagtgagagctaatcttattagagacaata |
192 |
Q |
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| T |
24653539 |
aattcattttaatttttttttttaagttttcatttagtgatagctaattatttcaaaaataaataaatattagtgagagctaatcttattagagacaata |
24653440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 127; E-Value: 9e-66
Query Start/End: Original strand, 2 - 192
Target Start/End: Complemental strand, 24651626 - 24651440
Alignment:
| Q |
2 |
tgaccaataacattaaattgtttaaatatacaaacaaatatgatatgatgcaatttattctaaaagagtttattcctatgagtttcctagacacaaattc |
101 |
Q |
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|||||| |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||||||| |||| |||| ||||||||| |
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| T |
24651626 |
tgaccattaacattaaattgtttaaatatacaaacaaatatgatatgttgtaatttattctaaaa-agtttattcctataagttacctacacacaaatta |
24651528 |
T |
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| Q |
102 |
attttaa-ttttttataagtttcatttagtgatagctaattatttcaaaaataaataaatattagtgagagctaatcttattagagacaata |
192 |
Q |
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| T |
24651527 |
attttaatttttttataagttgcatttagtgatagctaattatttcaa----aaataaatattagtgagagctaatcttattagagacaata |
24651440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 108 - 182
Target Start/End: Original strand, 29418556 - 29418629
Alignment:
| Q |
108 |
attttttataagtttcatttagtgatagctaattatttcaaaaataaataaatattagtgagagctaatcttatt |
182 |
Q |
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|||||||||||||||||||||||||||| | ||| ||| |||||||||||||||||||||||||||||||||||| |
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| T |
29418556 |
attttttataagtttcatttagtgatagatgatttttt-aaaaataaataaatattagtgagagctaatcttatt |
29418629 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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